General features
| Gene ID | MYPE1980
|
| Type | CDS
|
| From | 249228
|
| To | 252200
|
| Strand | +
|
| General name | dnaE
|
| Definition | DNA polymerase III subunit alpha
|
| nt length | 2973
|
| aa length | 990
|
| m.w. | 113771.58
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN378 dnaE DNA polymerase III alpha subunit 453650:456268 | 453 | 1.4e-146
|
| mgen | WP_009885893.1 DNA polymerase III subunit alpha [Mycoplasma genitalium] | 452 | 4.2e-146
|
| mpul | WP_010925520.1 DNA polymerase III subunit alpha [Mycoplasma pulmonis] | 432 | 1.7e-137
|
| mmob | WP_011265007.1 DNA polymerase III subunit alpha [Mycoplasma mobile] | 498 | 1.5e-162
|
| mmyc | NP_975661.1 DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 543 | 1.9e-179
|
| mgal | WP_011113474.1 DNA polymerase III subunit alpha [Mycoplasma gallisepticum] | 614 | 0.0e+00
|
| uure | WP_012560200.1 DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 743 | 0.0e+00
|
| bsub | NP_390801.1 DNA polymerase III (alpha subunit), DnaE3 [Bacillus subtilis subsp. subtilis str. 168] | 568 | 0.0e+00
|
| cace | WP_010963838.1 MULTISPECIES: DNA polymerase III subunit alpha [Clostridium] | 464 | 5.0e-147
|
| ecoli | NP_414726.1 DNA polymerase III subunit alpha [Escherichia coli str. K-12 substr. MG1655] | 454 | 4.1e-143
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_pol3_alpha | 1 | Bacterial DNA polymerase III alpha NTPase domain | 243-500 | 320.2 | 1.1e-95
|
| DNA_pol3_finger | 1 | Bacterial DNA polymerase III alpha subunit finger domain | 503-665 | 190.1 | 1.7e-56
|
| HHH_6 | 1 | Helix-hairpin-helix motif | 739-829 | 65.2 | 4.7e-18
|
| PHP | 1 | PHP domain | 18-113 | 48.4 | 1.2e-12
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077025.1| DNA polymerase III subunit alpha [Mycoplasma penetrans] | 990/990 (100%) | 5153 | 0.0e+00
|
| ref|WP_004024657.1| DNA polymerase III subunit alpha [Mycoplasma iowae] | 463/824 (56%) | 2277 | 0.0e+00
|
| ref|WP_051790330.1| DNA polymerase III subunit alpha [Mycoplasma iowae] | 463/824 (56%) | 2273 | 0.0e+00
|
| ref|WP_129692506.1| DNA polymerase III subunit alpha [Mycoplasma iowae] | 462/824 (56%) | 2269 | 0.0e+00
|
| ref|WP_052663445.1| DNA polymerase III subunit alpha [Mycoplasma testudinis] | 428/931 (45%) | 1959 | 0.0e+00
|
| ref|WP_052663892.1| DNA polymerase III subunit alpha [Mycoplasma alvi] | 433/944 (45%) | 1954 | 0.0e+00
|
| ref|WP_004025710.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 436/951 (45%) | 1920 | 0.0e+00
|
| ref|WP_004027240.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 436/951 (45%) | 1920 | 0.0e+00
|
| ref|WP_004027040.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 436/951 (45%) | 1918 | 0.0e+00
|
| ref|WP_012560200.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 436/951 (45%) | 1918 | 0.0e+00
|
Maintained by Jun Ishikawa