General features
| Gene ID | MPN378
|
| Type | CDS
|
| From | 453650
|
| To | 456268
|
| Strand | +
|
| General name | dnaE
|
| Definition | DNA polymerase III alpha subunit
|
| nt length | 2619
|
| aa length | 872
|
| m.w. | 99256.68
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1980 dnaE DNA polymerase III subunit alpha 249228:252200 | 416 | 1.8e-132
|
| mgen | WP_009885893.1 DNA polymerase III subunit alpha [Mycoplasma genitalium] | 969 | 0.0e+00
|
| mpul | WP_010925520.1 DNA polymerase III subunit alpha [Mycoplasma pulmonis] | 288 | 5.5e-85
|
| mmob | WP_011265007.1 DNA polymerase III subunit alpha [Mycoplasma mobile] | 379 | 1.1e-118
|
| mmyc | NP_975661.1 DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 369 | 1.0e-114
|
| mgal | WP_011113474.1 DNA polymerase III subunit alpha [Mycoplasma gallisepticum] | 481 | 7.1e-157
|
| uure | WP_012560200.1 DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 473 | 2.7e-154
|
| bsub | NP_390801.1 DNA polymerase III (alpha subunit), DnaE3 [Bacillus subtilis subsp. subtilis str. 168] | 428 | 4.1e-135
|
| cace | WP_010963838.1 MULTISPECIES: DNA polymerase III subunit alpha [Clostridium] | 347 | 9.4e-105
|
| ecoli | NP_414726.1 DNA polymerase III subunit alpha [Escherichia coli str. K-12 substr. MG1655] | 352 | 9.9e-107
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_pol3_alpha | 1 | Bacterial DNA polymerase III alpha NTPase domain | 249-506 | 258.3 | 8.3e-77
|
| DNA_pol3_finger | 1 | Bacterial DNA polymerase III alpha subunit finger domain | 509-673 | 169.6 | 3.5e-50
|
| PHP | 1 | PHP domain | 5-251 | 44.7 | 1.7e-11
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874734.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 872/872 (100%) | 4629 | 0.0e+00
|
| ref|WP_058140845.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 871/872 (99%) | 4625 | 0.0e+00
|
| ref|WP_086131706.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 871/872 (99%) | 4625 | 0.0e+00
|
| ref|WP_014325501.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 871/872 (99%) | 4623 | 0.0e+00
|
| ref|WP_054175810.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 870/872 (99%) | 4620 | 0.0e+00
|
| ref|WP_086132698.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 870/872 (99%) | 4620 | 0.0e+00
|
| ref|WP_159202497.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 870/872 (99%) | 4620 | 0.0e+00
|
| ref|WP_159201938.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 870/872 (99%) | 4619 | 0.0e+00
|
| ref|WP_014574962.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 870/872 (99%) | 4618 | 0.0e+00
|
| ref|WP_058141084.1| DNA polymerase III subunit alpha [Mycoplasma pneumoniae] | 871/872 (99%) | 4618 | 0.0e+00
|
Maintained by Jun Ishikawa