General features

Gene IDMYPE9440
TypeCDS
From1266388
To1265831
Strand-
General name
Definitionribonucleasr M5
nt length558
aa length185
m.w.21322.79
COG[L] Replication, recombination and repair

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN072 yabF nucelotidyl transferase/polynicleotide cleavage-like protein 86946:864101655.1e-54
mgenWP_009885722.1 ribonuclease M5 [Mycoplasma genitalium]1145.2e-34
mmycNP_975014.1 hypothetical protein MSC_0003 [Mycoplasma mycoides subsp. mycoides SC str. PG1]1223.0e-37
mgalWP_011113831.1 ribonuclease M5 [Mycoplasma gallisepticum]1603.1e-52
uureWP_004025879.1 ribonuclease M5 [Ureaplasma urealyticum]1403.0e-44
bsubNP_387922.1 ribonuclease M5 [Bacillus subtilis subsp. subtilis str. 168]1157.6e-34
caceWP_010966269.1 MULTISPECIES: ribonuclease M5 [Clostridium]921.1e-24

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

DUF40931Domain of unknown function (DUF4093)97-17574.47.3e-21

Toprim_41Toprim domain11-7931.61.7e-07

Toprim1Toprim domain12-8128.71.1e-06

Toprim_21Toprim-like14-9126.09e-06

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_044891316.1| ribonuclease M5 [Mycoplasma penetrans]183/183 (100%)9171.4e-124
ref|WP_052663091.1| ribonuclease M5 [Mycoplasma pirum]91/172 (52%)4352.7e-51
ref|WP_010874429.1| ribonuclease M5 [Mycoplasma pneumoniae] 78/164 (47%)4171.3e-48
ref|WP_036498795.1| ribonuclease M5 [Mycoplasma testudinis]89/172 (51%)4154.5e-48
ref|WP_159201935.1| ribonuclease M5 [Mycoplasma pneumoniae]78/164 (47%)4135.6e-48
ref|WP_087244644.1| MULTISPECIES: ribonuclease M5 [unclassified Massilimicrobiota]77/174 (44%)4073.9e-47
ref|WP_014886669.1| ribonuclease M5 [Mycoplasma gallisepticum]82/163 (50%)4084.2e-47
ref|WP_011113831.1| ribonuclease M5 [Mycoplasma gallisepticum]82/163 (50%)4066.7e-47
ref|WP_125118243.1| ribonuclease M5 [Intestinibaculum porci]73/165 (44%)4021.9e-46
ref|WP_027121811.1| ribonuclease M5 [Mycoplasma imitans]82/163 (50%)4032.5e-46

Maintained by Jun Ishikawa