General features

Gene IDMPN072
TypeCDS
From86946
To86410
Strand-
General nameyabF
Definitionnucelotidyl transferase/polynicleotide cleavage-like protein
nt length537
aa length178
m.w.20411.67
COG[L] Replication, recombination and repair

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mypeMYPE9440 ribonucleasr M5 1266388:12658311658.2e-54
mgenWP_009885722.1 ribonuclease M5 [Mycoplasma genitalium]1822.9e-61
mmycNP_975014.1 hypothetical protein MSC_0003 [Mycoplasma mycoides subsp. mycoides SC str. PG1]1131.3e-33
mgalWP_011113831.1 ribonuclease M5 [Mycoplasma gallisepticum]1503.4e-48
uureWP_004025879.1 ribonuclease M5 [Ureaplasma urealyticum]1582.2e-51
bsubNP_387922.1 ribonuclease M5 [Bacillus subtilis subsp. subtilis str. 168]827.0e-21
caceWP_010966269.1 MULTISPECIES: ribonuclease M5 [Clostridium]751.5e-18

*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

DUF40931Domain of unknown function (DUF4093)97-17657.61.2e-15

Toprim1Toprim domain12-8435.31.1e-08

Toprim_21Toprim-like13-8729.11e-06

Toprim_41Toprim domain12-7626.94.8e-06

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_010874429.1| ribonuclease M5 [Mycoplasma pneumoniae] 178/178 (100%)9309.6e-127
ref|WP_159201935.1| ribonuclease M5 [Mycoplasma pneumoniae]177/178 (99%)9221.6e-125
ref|WP_038102657.1| ribonuclease M5 [Ureaplasma diversum]91/171 (53%)4733.6e-57
ref|WP_009885722.1| ribonuclease M5 [Mycoplasma genitalium]107/178 (60%)4639.7e-56
ref|WP_014894121.1| ribonuclease M5 [Mycoplasma genitalium]106/178 (59%)4621.4e-55
ref|WP_052663091.1| ribonuclease M5 [Mycoplasma pirum]88/174 (50%)4431.4e-52
ref|WP_052663988.1| ribonuclease M5 [Mycoplasma alvi]84/163 (51%)4422.1e-52
ref|WP_044891316.1| ribonuclease M5 [Mycoplasma penetrans]78/166 (46%)4171.0e-48
ref|WP_036498795.1| ribonuclease M5 [Mycoplasma testudinis]81/165 (49%)4171.7e-48
ref|WP_006688912.1| ribonuclease M5 [Ureaplasma parvum]75/162 (46%)4057.6e-47

Maintained by Jun Ishikawa