General features
| Gene ID | MPN426
|
| Type | CDS
|
| From | 514542
|
| To | 511594
|
| Strand | -
|
| General name |
|
| Definition | SMC family, chromosome/DNA binding/protecting functions
|
| nt length | 2949
|
| aa length | 982
|
| m.w. | 110831.72
|
| COG | [D] Cell cycle control, cell division, chromosome partitioning
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE4830 structural maintenance of chromosomes SMC superfamily proteins 618467:621421 | 751 | 0.0e+00
|
| mgen | WP_010869416.1 chromosome segregation protein SMC [Mycoplasma genitalium] | 1441 | 0.0e+00
|
| mpul | WP_010925515.1 AAA family ATPase [Mycoplasma pulmonis] | 464 | 1.0e-149
|
| mmob | WP_011264930.1 AAA family ATPase [Mycoplasma mobile] | 511 | 9.6e-168
|
| mmyc | NP_975462.1 hypothetical protein MSC_0476 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 461 | 3.0e-148
|
| mgal | WP_011113402.1 AAA family ATPase [Mycoplasma gallisepticum] | 860 | 0.0e+00
|
| uure | WP_004026333.1 chromosome segregation protein SMC [Ureaplasma urealyticum] | 567 | 0.0e+00
|
| bsub | NP_389476.2 chromosome condensation and segregation SMC ATPase [Bacillus subtilis subsp. subtilis str. 168] | 214 | 3.4e-58
|
| cace | WP_010965058.1 MULTISPECIES: chromosome segregation protein SMC [Clostridium] | 198 | 5.2e-53
|
| ecoli | YP_026172.1 DNA repair protein RecN [Escherichia coli str. K-12 substr. MG1655] | 53 | 4.9e-08
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| SMC_N | 1 | RecF/RecN/SMC N terminal domain | 3-962 | 232.0 | 5.3e-69
|
| SMC_hinge | 1 | SMC proteins Flexible Hinge Domain | 416-535 | 72.0 | 4.7e-20
|
| AAA_21 | 1 | AAA domain, putative AbiEii toxin, Type IV TA system | 829-940 | 60.1 | 3e-16
|
| AAA_23 | 1 | AAA domain | 11-303 | 47.9 | 2.2e-12
|
| AAA_15 | 1 | AAA ATPase domain | 5-380 | 45.6 | 7.5e-12
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874782.1| AAA family ATPase [Mycoplasma pneumoniae] | 982/982 (100%) | 5174 | 0.0e+00
|
| ref|WP_161609387.1| AAA family ATPase [Mycoplasma pneumoniae] | 981/982 (99%) | 5167 | 0.0e+00
|
| ref|WP_014574976.1| AAA family ATPase [Mycoplasma pneumoniae] | 980/982 (99%) | 5160 | 0.0e+00
|
| ref|WP_014325525.1| AAA family ATPase [Mycoplasma pneumoniae] | 979/982 (99%) | 5150 | 0.0e+00
|
| ref|WP_159201932.1| AAA family ATPase [Mycoplasma pneumoniae] | 979/982 (99%) | 5149 | 0.0e+00
|
| ref|WP_159243739.1| AAA family ATPase, partial [Mycoplasma pneumoniae] | 885/885 (100%) | 4658 | 0.0e+00
|
| ref|WP_010869416.1| chromosome segregation protein SMC [Mycoplasma genitalium] | 717/982 (73%) | 3729 | 0.0e+00
|
| ref|WP_014894271.1| chromosome segregation protein SMC [Mycoplasma genitalium] | 717/982 (73%) | 3726 | 0.0e+00
|
| ref|WP_159203650.1| AAA family ATPase, partial [Mycoplasma pneumoniae] | 684/688 (99%) | 3582 | 0.0e+00
|
| ref|WP_027120119.1| AAA family ATPase [Mycoplasma testudinis] | 508/978 (51%) | 2541 | 0.0e+00
|
Maintained by Jun Ishikawa