General features
| Gene ID | MYPE4060
|
| Type | CDS
|
| From | 531024
|
| To | 532304
|
| Strand | +
|
| General name | serS
|
| Definition | seryl-tRNA synthetase
|
| nt length | 1281
|
| aa length | 426
|
| m.w. | 48379.78
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN005 serS seryl-tRNA synthetase 7312:8574 | 408 | 2.7e-142
|
| mgen | WP_010869286.1 serine--tRNA ligase [Mycoplasma genitalium] | 400 | 2.8e-139
|
| mpul | WP_010924838.1 serine--tRNA ligase [Mycoplasma pulmonis] | 296 | 1.3e-98
|
| mmob | WP_011264612.1 serine--tRNA ligase [Mycoplasma mobile] | 348 | 8.6e-119
|
| mmyc | NP_975077.1 seryl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 347 | 1.9e-118
|
| mgal | WP_011113985.1 serine--tRNA ligase [Mycoplasma gallisepticum] | 421 | 2.6e-147
|
| uure | WP_004026098.1 serine--tRNA ligase [Ureaplasma urealyticum] | 466 | 4.2e-165
|
| phyt | WP_011160458.1 MULTISPECIES: serine--tRNA ligase [Candidatus Phytoplasma asteris] | 362 | 2.1e-124
|
| bsub | NP_387894.1 seryl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] | 449 | 1.2e-157
|
| cace | WP_010963350.1 MULTISPECIES: serine--tRNA ligase [Clostridium] | 429 | 5.5e-150
|
| ecoli | NP_415413.1 serine--tRNA ligase [Escherichia coli str. K-12 substr. MG1655] | 395 | 1.4e-136
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| tRNA-synt_2b | 1 | tRNA synthetase class II core domain (G, H, P, S and T) | 223-400 | 111.8 | 3.6e-32
|
| Seryl_tRNA_N | 1 | Seryl-tRNA synthetase N-terminal domain | 1-109 | 82.0 | 3.3e-23
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077232.1| serine--tRNA ligase [Mycoplasma penetrans] | 426/426 (100%) | 2243 | 0.0e+00
|
| ref|WP_004025216.1| serine--tRNA ligase [Mycoplasma iowae] | 274/417 (65%) | 1430 | 0.0e+00
|
| ref|WP_036451977.1| serine--tRNA ligase [Mycoplasma iowae] | 275/422 (65%) | 1430 | 0.0e+00
|
| ref|WP_006785405.1| MULTISPECIES: serine--tRNA ligase [Turicibacter] | 232/417 (55%) | 1236 | 2.2e-165
|
| ref|WP_036652847.1| serine--tRNA ligase [Paenibacillus pini] | 230/418 (55%) | 1236 | 2.4e-165
|
| ref|WP_155234840.1| serine--tRNA ligase [Turicibacter sanguinis] | 232/417 (55%) | 1234 | 4.6e-165
|
| ref|WP_155232223.1| serine--tRNA ligase [Turicibacter sanguinis] | 231/417 (55%) | 1231 | 1.3e-164
|
| ref|WP_155229860.1| serine--tRNA ligase [Turicibacter sanguinis] | 231/417 (55%) | 1231 | 1.3e-164
|
| ref|WP_089549444.1| MULTISPECIES: serine--tRNA ligase [Paenibacillus] | 229/418 (54%) | 1229 | 3.1e-164
|
| ref|WP_145030086.1| serine--tRNA ligase [Paenibacillus sp. Y412MC10] | 229/418 (54%) | 1228 | 3.7e-164
|
Maintained by Jun Ishikawa