General features
| Gene ID | MPN401
|
| Type | CDS
|
| From | 483247
|
| To | 482765
|
| Strand | -
|
| General name | greA
|
| Definition | transcription elongation factor
|
| nt length | 483
|
| aa length | 160
|
| m.w. | 18101.28
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE3670 greA transcription elongation factor 478578:479063 | 167 | 1.6e-55
|
| mgen | WP_009885993.1 transcription elongation factor GreA [Mycoplasma genitalium] | 271 | 8.0e-97
|
| mpul | WP_041364168.1 transcription elongation factor GreA [Mycoplasma pulmonis] | 130 | 5.6e-41
|
| mmob | WP_011264955.1 transcription elongation factor GreA [Mycoplasma mobile] | 105 | 3.0e-31
|
| mmyc | NP_975295.1 transcription elongation factor GreA [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 139 | 1.9e-44
|
| mgal | WP_011113424.1 transcription elongation factor GreA [Mycoplasma gallisepticum] | 158 | 7.0e-52
|
| uure | WP_012560190.1 transcription elongation factor GreA [Ureaplasma urealyticum] | 119 | 1.9e-36
|
| phyt | WP_034172300.1 MULTISPECIES: transcription elongation factor GreA [Candidatus Phytoplasma] | 111 | 7.2e-34
|
| bsub | NP_390610.1 transcription elongation factor resolving backtracking / stalling [Bacillus subtilis subsp. subtilis str. 168] | 113 | 1.3e-33
|
| cace | WP_010966474.1 MULTISPECIES: transcription elongation factor GreA [Clostridium] | 110 | 1.9e-32
|
| ecoli | NP_417648.4 transcription elongation factor GreA [Escherichia coli str. K-12 substr. MG1655] | 98 | 1.2e-27
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| GreA_GreB_N | 1 | Transcription elongation factor, N-terminal | 6-75 | 99.7 | 7.2e-29
|
| GreA_GreB | 1 | Transcription elongation factor, GreA/GreB, C-term | 85-157 | 70.3 | 9.6e-20
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874757.1| transcription elongation factor GreA [Mycoplasma pneumoniae] | 160/160 (100%) | 826 | 1.5e-111
|
| ref|WP_014325511.1| transcription elongation factor GreA [Mycoplasma pneumoniae] | 159/159 (100%) | 817 | 4.3e-110
|
| ref|WP_159203189.1| transcription elongation factor GreA [Mycoplasma pneumoniae] | 158/159 (99%) | 812 | 1.9e-109
|
| ref|WP_009885993.1| transcription elongation factor GreA [Mycoplasma genitalium] | 136/159 (85%) | 693 | 2.7e-91
|
| ref|WP_027123932.1| transcription elongation factor GreA [Mycoplasma pirum] | 91/156 (58%) | 453 | 8.4e-55
|
| ref|WP_027120205.1| transcription elongation factor GreA [Mycoplasma testudinis] | 94/159 (59%) | 453 | 9.6e-55
|
| ref|WP_033160276.1| transcription elongation factor GreA [Mycoplasma alvi] | 88/156 (56%) | 452 | 1.4e-54
|
| ref|WP_011077194.1| transcription elongation factor GreA [Mycoplasma penetrans] | 88/159 (55%) | 424 | 2.4e-50
|
| ref|WP_011113424.1| transcription elongation factor GreA [Mycoplasma gallisepticum] | 83/154 (53%) | 399 | 1.5e-46
|
| ref|WP_085063787.1| transcription elongation factor GreA [Mycoplasma gallisepticum] | 83/154 (53%) | 398 | 2.3e-46
|
Maintained by Jun Ishikawa