General features
| Gene ID | MPN357
|
| Type | CDS
|
| From | 427511
|
| To | 425535
|
| Strand | -
|
| General name | lig
|
| Definition | DNA ligase
|
| nt length | 1977
|
| aa length | 658
|
| m.w. | 73969.46
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1840 ligA NAD-dependent DNA ligase 231463:233568 | 594 | 0.0e+00
|
| mgen | WP_009885791.1 DNA ligase (NAD(+)) LigA [Mycoplasma genitalium] | 889 | 0.0e+00
|
| mpul | WP_010925193.1 DNA ligase (NAD(+)) LigA [Mycoplasma pulmonis] | 361 | 2.4e-117
|
| mmob | WP_011264715.1 DNA ligase (NAD(+)) LigA [Mycoplasma mobile] | 410 | 2.0e-136
|
| mmyc | NP_975740.1 DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 481 | 5.6e-164
|
| mgal | WP_011113960.1 NAD-dependent DNA ligase LigA [Mycoplasma gallisepticum] | 550 | 0.0e+00
|
| uure | WP_004026162.1 NAD-dependent DNA ligase LigA [Ureaplasma urealyticum] | 577 | 0.0e+00
|
| phyt | WP_011160788.1 MULTISPECIES: DNA ligase (NAD(+)) LigA [Candidatus Phytoplasma asteris] | 432 | 4.1e-145
|
| bsub | NP_388544.1 DNA ligase (NAD-dependent) [Bacillus subtilis subsp. subtilis str. 168] | 488 | 2.9e-166
|
| cace | WP_010965961.1 NAD-dependent DNA ligase LigA [Clostridium acetobutylicum] | 354 | 3.0e-114
|
| ecoli | NP_416906.1 DNA ligase [Escherichia coli str. K-12 substr. MG1655] | 439 | 9.0e-147
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_ligase_aden | 1 | NAD-dependent DNA ligase adenylation domain | 3-307 | 425.4 | 1.2e-127
|
| DNA_ligase_OB | 1 | NAD-dependent DNA ligase OB-fold domain | 310-386 | 105.3 | 1.1e-30
|
| HHH_2 | 1 | Helix-hairpin-helix motif | 501-563 | 83.7 | 7e-24
|
| HHH_5 | 1 | Helix-hairpin-helix domain | 506-551 | 32.0 | 1.4e-07
|
| BRCT | 1 | BRCA1 C Terminus (BRCT) domain | 591-654 | 28.2 | 1.8e-06
|
| DNA_ligase_ZBD | 1 | NAD-dependent DNA ligase C4 zinc finger domain | 396-420 | 27.1 | 3.1e-06
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874713.1| DNA ligase (NAD(+)) LigA [Mycoplasma pneumoniae] | 658/658 (100%) | 3508 | 0.0e+00
|
| ref|WP_014574957.1| DNA ligase (NAD(+)) LigA [Mycoplasma pneumoniae] | 656/658 (99%) | 3498 | 0.0e+00
|
| ref|WP_014325482.1| DNA ligase (NAD(+)) LigA [Mycoplasma pneumoniae] | 655/658 (99%) | 3493 | 0.0e+00
|
| ref|WP_159203669.1| DNA ligase (NAD(+)) LigA, partial [Mycoplasma pneumoniae] | 519/521 (99%) | 2768 | 0.0e+00
|
| ref|WP_009885791.1| DNA ligase (NAD(+)) LigA [Mycoplasma genitalium] | 433/653 (66%) | 2296 | 0.0e+00
|
| ref|WP_014894236.1| DNA ligase (NAD(+)) LigA [Mycoplasma genitalium] | 433/653 (66%) | 2296 | 0.0e+00
|
| ref|WP_014894006.1| DNA ligase (NAD(+)) LigA [Mycoplasma genitalium] | 433/653 (66%) | 2294 | 0.0e+00
|
| ref|WP_014894436.1| DNA ligase (NAD(+)) LigA [Mycoplasma genitalium] | 432/653 (66%) | 2290 | 0.0e+00
|
| ref|WP_027119445.1| DNA ligase (NAD(+)) LigA [Mycoplasma testudinis] | 307/652 (47%) | 1565 | 0.0e+00
|
| ref|WP_011077011.1| DNA ligase (NAD(+)) LigA [Mycoplasma penetrans] | 297/652 (45%) | 1532 | 0.0e+00
|
Maintained by Jun Ishikawa