General features

Gene IDMYPE1840
TypeCDS
From231463
To233568
Strand+
General nameligA
DefinitionNAD-dependent DNA ligase
nt length2106
aa length701
m.w.80829.36
COG[L] Replication, recombination and repair


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN357 lig DNA ligase 427511:4255355940.0e+00
mgenWP_009885791.1 DNA ligase (NAD(+)) LigA [Mycoplasma genitalium]5400.0e+00
mpulWP_010925193.1 DNA ligase (NAD(+)) LigA [Mycoplasma pulmonis]3382.8e-108
mmobWP_011264715.1 DNA ligase (NAD(+)) LigA [Mycoplasma mobile]4293.5e-143
mmycNP_975740.1 DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]5231.3e-179
mgalWP_011113960.1 NAD-dependent DNA ligase LigA [Mycoplasma gallisepticum]5047.9e-172
uureWP_004026162.1 NAD-dependent DNA ligase LigA [Ureaplasma urealyticum]5930.0e+00
phytWP_011160788.1 MULTISPECIES: DNA ligase (NAD(+)) LigA [Candidatus Phytoplasma asteris]4798.6e-163
bsubNP_388544.1 DNA ligase (NAD-dependent) [Bacillus subtilis subsp. subtilis str. 168]5290.0e+00
caceWP_010965961.1 NAD-dependent DNA ligase LigA [Clostridium acetobutylicum]3938.8e-129
ecoliNP_416906.1 DNA ligase [Escherichia coli str. K-12 substr. MG1655]4407.9e-147

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

DNA_ligase_aden1NAD-dependent DNA ligase adenylation domain22-328397.44.1e-119

DNA_ligase_OB1NAD-dependent DNA ligase OB-fold domain332-40995.81e-27

HHH_21Helix-hairpin-helix motif540-60371.45e-20

BRCT1BRCA1 C Terminus (BRCT) domain633-69643.53.1e-11

DNA_ligase_ZBD1NAD-dependent DNA ligase C4 zinc finger domain418-44231.91e-07

HHH_51Helix-hairpin-helix domain542-59129.01.2e-06

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_011077011.1| DNA ligase (NAD(+)) LigA [Mycoplasma penetrans]700/701 (99%)36790.0e+00
ref|WP_129374594.1| DNA ligase (NAD(+)) LigA [Mycoplasma penetrans]699/701 (99%)36760.0e+00
ref|WP_004025079.1| DNA ligase (NAD(+)) LigA [Mycoplasma iowae]403/684 (58%)20270.0e+00
ref|WP_027119445.1| DNA ligase (NAD(+)) LigA [Mycoplasma testudinis]316/676 (46%)15710.0e+00
ref|WP_038102142.1| NAD-dependent DNA ligase LigA [Ureaplasma diversum]330/683 (48%)15430.0e+00
ref|WP_004026263.1| DNA ligase (NAD(+)) LigA [Ureaplasma urealyticum]330/675 (48%)15360.0e+00
ref|WP_114119882.1| NAD-dependent DNA ligase LigA [Ureaplasma urealyticum]330/675 (48%)15350.0e+00
ref|WP_004026844.1| DNA ligase (NAD(+)) LigA [Ureaplasma urealyticum]330/675 (48%)15340.0e+00
ref|WP_014325482.1| DNA ligase (NAD(+)) LigA [Mycoplasma pneumoniae]297/675 (44%)15330.0e+00
ref|WP_014574957.1| DNA ligase (NAD(+)) LigA [Mycoplasma pneumoniae]297/675 (44%)15320.0e+00


Maintained by Jun Ishikawa