General features
| Gene ID | MYPE9940
|
| Type | CDS
|
| From | 1316942
|
| To | 1316568
|
| Strand | -
|
| General name | rpsM
|
| Definition | ribosomal protein S13
|
| nt length | 375
|
| aa length | 124
|
| m.w. | 14175.51
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN189 rpsM ribosomal protein S13 230703:231077 | 187 | 2.3e-64
|
| mgen | WP_009885860.1 30S ribosomal protein S13 [Mycoplasma genitalium] | 185 | 7.1e-64
|
| mpul | WP_010925364.1 30S ribosomal protein S13 [Mycoplasma pulmonis] | 158 | 5.1e-53
|
| mmob | WP_011264779.1 30S ribosomal protein S13 [Mycoplasma mobile] | 175 | 9.8e-60
|
| mmyc | NP_975699.1 30S ribosomal protein S13 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 156 | 2.3e-52
|
| mgal | WP_011113889.1 30S ribosomal protein S13 [Mycoplasma gallisepticum] | 204 | 2.8e-71
|
| uure | WP_004025797.1 30S ribosomal protein S13 [Ureaplasma urealyticum] | 192 | 2.5e-66
|
| phyt | WP_011160600.1 MULTISPECIES: 30S ribosomal protein S13 [Candidatus Phytoplasma asteris] | 149 | 1.1e-49
|
| bsub | NP_388022.2 ribosomal protein S13 [Bacillus subtilis subsp. subtilis str. 168] | 171 | 1.8e-57
|
| cace | WP_010966388.1 MULTISPECIES: 30S ribosomal protein S13 [Clostridium] | 138 | 1.9e-44
|
| ecoli | NP_417757.1 30S ribosomal subunit protein S13 [Escherichia coli str. K-12 substr. MG1655] | 155 | 3.4e-51
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S13 | 1 | Ribosomal protein S13/S18 | 3-108 | 116.5 | 9.9e-34
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077808.1| 30S ribosomal protein S13 [Mycoplasma penetrans] | 124/124 (100%) | 628 | 1.6e-82
|
| ref|WP_004024680.1| 30S ribosomal protein S13 [Mycoplasma iowae] | 107/124 (86%) | 563 | 1.6e-72
|
| ref|WP_027120108.1| 30S ribosomal protein S13 [Mycoplasma testudinis] | 101/124 (81%) | 529 | 2.1e-67
|
| ref|WP_027124198.1| 30S ribosomal protein S13 [Mycoplasma pirum] | 101/124 (81%) | 527 | 4.6e-67
|
| ref|WP_033160195.1| 30S ribosomal protein S13 [Mycoplasma alvi] | 99/124 (79%) | 525 | 7.9e-67
|
| ref|WP_027121764.1| 30S ribosomal protein S13 [Mycoplasma imitans] | 100/124 (80%) | 519 | 6.0e-66
|
| ref|WP_011113889.1| 30S ribosomal protein S13 [Mycoplasma gallisepticum] | 100/124 (80%) | 519 | 6.1e-66
|
| ref|WP_031489019.1| 30S ribosomal protein S13 [Ureaplasma canigenitalium] | 99/124 (79%) | 494 | 6.2e-62
|
| ref|WP_006688863.1| 30S ribosomal protein S13 [Ureaplasma parvum] | 98/124 (79%) | 488 | 4.1e-61
|
| ref|WP_004025797.1| 30S ribosomal protein S13 [Ureaplasma urealyticum] | 98/124 (79%) | 487 | 5.9e-61
|
Maintained by Jun Ishikawa