General features
| Gene ID | MYPE9920
|
| Type | CDS
|
| From | 1316166
|
| To | 1315171
|
| Strand | -
|
| General name | rpoA
|
| Definition | RNA polymerase subunit alpha
|
| nt length | 996
|
| aa length | 331
|
| m.w. | 37330.71
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN191 rpoA RNA polymerase alpha core subunit 231448:232431 | 324 | 2.1e-112
|
| mgen | WP_009885862.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma genitalium] | 324 | 2.1e-112
|
| mpul | WP_010925362.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma pulmonis] | 157 | 6.5e-47
|
| mmob | WP_011264781.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma mobile] | 192 | 8.5e-61
|
| mmyc | NP_975697.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 232 | 3.9e-76
|
| mgal | WP_011113887.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma gallisepticum] | 315 | 1.7e-108
|
| uure | WP_004025702.1 DNA-directed RNA polymerase subunit alpha [Ureaplasma urealyticum] | 303 | 9.4e-104
|
| phyt | WP_011160671.1 hypothetical protein [Onion yellows phytoplasma] | 23 | 2.1e+00
|
| bsub | NP_388024.1 RNA polymerase (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] | 231 | 4.3e-75
|
| cace | WP_010966385.1 MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Clostridium] | 234 | 1.8e-76
|
| ecoli | NP_417754.1 RNA polymerase subunit alpha [Escherichia coli str. K-12 substr. MG1655] | 157 | 1.5e-46
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RNA_pol_A_CTD | 1 | Bacterial RNA polymerase, alpha chain C terminal domain | 261-320 | 90.5 | 4.2e-26
|
| RNA_pol_A_bac | 1 | RNA polymerase Rpb3/RpoA insert domain | 62-164 | 67.9 | 9e-19
|
| RNA_pol_L | 1 | RNA polymerase Rpb3/Rpb11 dimerisation domain | 27-234 | 55.1 | 3.7e-15
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077806.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma penetrans] | 331/331 (100%) | 1711 | 0.0e+00
|
| ref|WP_129374477.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma penetrans] | 330/331 (99%) | 1706 | 0.0e+00
|
| ref|WP_004024678.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma iowae] | 222/329 (67%) | 1156 | 3.4e-156
|
| ref|WP_027124196.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pirum] | 170/327 (51%) | 899 | 3.0e-117
|
| ref|WP_033160197.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma alvi] | 165/327 (50%) | 872 | 3.4e-113
|
| ref|WP_027120110.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma testudinis] | 165/327 (50%) | 855 | 1.6e-110
|
| ref|WP_014325393.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pneumoniae] | 160/327 (48%) | 841 | 1.8e-108
|
| ref|WP_159202223.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pneumoniae] | 160/327 (48%) | 839 | 3.3e-108
|
| ref|WP_014894603.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma genitalium] | 163/327 (49%) | 835 | 1.6e-107
|
| ref|WP_010874548.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pneumoniae] | 159/327 (48%) | 831 | 5.2e-107
|
Maintained by Jun Ishikawa