General features
| Gene ID | MYPE9280
|
| Type | CDS
|
| From | 1245544
|
| To | 1246242
|
| Strand | +
|
| General name | truB
|
| Definition | tRNA pseudouridine 5S synthase
|
| nt length | 699
|
| aa length | 232
|
| m.w. | 27029.93
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpul | WP_010925351.1 tRNA pseudouridine(55) synthase TruB [Mycoplasma pulmonis] | 126 | 7.7e-37
|
| mmob | WP_041362950.1 tRNA pseudouridine(55) synthase TruB [Mycoplasma mobile] | 140 | 1.8e-42
|
| mmyc | NP_975334.1 tRNA pseudouridine synthase B [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 152 | 5.3e-47
|
| mgal | WP_011113348.1 tRNA pseudouridine(55) synthase TruB [Mycoplasma gallisepticum] | 150 | 5.9e-47
|
| uure | WP_004026154.1 tRNA pseudouridine(55) synthase TruB [Ureaplasma urealyticum] | 164 | 2.8e-52
|
| phyt | WP_011160612.1 tRNA pseudouridine synthase B [Onion yellows phytoplasma] | 142 | 2.4e-43
|
| bsub | NP_389548.1 tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis str. 168] | 125 | 6.6e-36
|
| cace | WP_010965111.1 MULTISPECIES: tRNA pseudouridine(55) synthase TruB [Clostridium] | 114 | 9.9e-32
|
| ecoli | NP_417635.1 tRNA pseudouridine(55) synthase [Escherichia coli str. K-12 substr. MG1655] | 112 | 1.3e-30
|
*mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| TruB_N | 1 | TruB family pseudouridylate synthase (N terminal domain) | 38-188 | 150.3 | 5e-44
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077744.1| tRNA pseudouridine(55) synthase TruB [Mycoplasma penetrans] | 232/232 (100%) | 1194 | 2.6e-165
|
| ref|WP_004025266.1| tRNA pseudouridine(55) synthase TruB [Mycoplasma iowae] | 104/203 (51%) | 517 | 1.8e-62
|
| ref|WP_051675940.1| tRNA pseudouridine(55) synthase TruB [Ureaplasma canigenitalium] | 90/209 (43%) | 464 | 1.6e-54
|
| ref|WP_038102256.1| tRNA pseudouridine(55) synthase TruB [Ureaplasma diversum] | 89/207 (42%) | 440 | 8.1e-51
|
| ref|WP_104207630.1| tRNA pseudouridine(55) synthase TruB [Mesoplasma corruscae] | 91/206 (44%) | 442 | 2.7e-50
|
| ref|WP_103980856.1| tRNA pseudouridine(55) synthase TruB [Helcococcus massiliensis] | 93/215 (43%) | 440 | 6.9e-50
|
| ref|WP_104206145.1| tRNA pseudouridine(55) synthase TruB [Entomoplasma ellychniae] | 91/209 (43%) | 439 | 1.0e-49
|
| ref|WP_083553232.1| tRNA pseudouridine(55) synthase TruB [Urinicoccus massiliensis] | 95/209 (45%) | 427 | 4.9e-48
|
| ref|WP_081944182.1| tRNA pseudouridine(55) synthase TruB [Tissierellia bacterium S5-A11] | 95/209 (45%) | 427 | 5.2e-48
|
| ref|WP_131748986.1| tRNA pseudouridine(55) synthase TruB [Anaerococcus prevotii] | 95/215 (44%) | 424 | 1.4e-47
|
Maintained by Jun Ishikawa