General features
| Gene ID | MYPE9170
|
| Type | CDS
|
| From | 1232216
|
| To | 1227840
|
| Strand | -
|
| General name | polC
|
| Definition | DNA polymerase III subunit alpha
|
| nt length | 4377
|
| aa length | 1458
|
| m.w. | 167741.33
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN034 polC DNA polymerase III (dnaE) alpha chain 41131:36800 | 1015 | 0.0e+00
|
| mgen | WP_010869296.1 DNA polymerase III subunit alpha [Mycoplasma genitalium] | 1004 | 0.0e+00
|
| mpul | WP_010925476.1 DNA polymerase III subunit alpha [Mycoplasma pulmonis] | 899 | 0.0e+00
|
| mmob | WP_011264577.1 PolC-type DNA polymerase III [Mycoplasma mobile] | 950 | 0.0e+00
|
| mmyc | NP_975350.1 DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 1016 | 0.0e+00
|
| mgal | WP_011113323.1 PolC-type DNA polymerase III [Mycoplasma gallisepticum] | 851 | 0.0e+00
|
| uure | WP_012560277.1 DNA polymerase III subunit alpha [Ureaplasma urealyticum] | 1002 | 0.0e+00
|
| phyt | WP_070097669.1 PolC-type DNA polymerase III [Onion yellows phytoplasma] | 733 | 0.0e+00
|
| bsub | NP_389540.1 DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] | 1044 | 0.0e+00
|
| cace | WP_010966712.1 MULTISPECIES: DNA polymerase III subunit alpha [Clostridium] | 880 | 0.0e+00
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_pol3_alpha | 1 | Bacterial DNA polymerase III alpha NTPase domain | 837-1105 | 195.2 | 1.4e-57
|
| PHP | 1 | PHP domain | 335-695 | 114.4 | 6.5e-33
|
| RNase_T | 1 | Exonuclease | 422-579 | 113.3 | 1.6e-32
|
| DNA_pol3_finger | 1 | Bacterial DNA polymerase III alpha subunit finger domain | 1109-1248 | 80.8 | 6.9e-23
|
| RNase_H_2 | 1 | RNase_H superfamily | 422-597 | 37.9 | 1.6e-09
|
| HHH_6 | 1 | Helix-hairpin-helix motif | 1372-1450 | 36.0 | 6e-09
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077736.1| PolC-type DNA polymerase III [Mycoplasma penetrans] | 1458/1458 (100%) | 7703 | 0.0e+00
|
| ref|WP_036452320.1| PolC-type DNA polymerase III [Mycoplasma iowae] | 780/1389 (56%) | 4032 | 0.0e+00
|
| ref|WP_004024665.1| PolC-type DNA polymerase III [Mycoplasma iowae] | 780/1389 (56%) | 4027 | 0.0e+00
|
| ref|WP_033159653.1| PolC-type DNA polymerase III [Mycoplasma alvi] | 591/1232 (47%) | 2921 | 0.0e+00
|
| ref|WP_036448591.1| PolC-type DNA polymerase III [Mycoplasma pirum] | 607/1313 (46%) | 2921 | 0.0e+00
|
| ref|WP_036499055.1| PolC-type DNA polymerase III [Mycoplasma testudinis] | 595/1388 (42%) | 2895 | 0.0e+00
|
| ref|WP_070406577.1| MULTISPECIES: PolC-type DNA polymerase III [unclassified Spiroplasma] | 616/1409 (43%) | 2825 | 0.0e+00
|
| ref|WP_040094120.1| PolC-type DNA polymerase III [Spiroplasma poulsonii] | 614/1409 (43%) | 2807 | 0.0e+00
|
| ref|WP_127092726.1| PolC-type DNA polymerase III [Spiroplasma poulsonii] | 614/1409 (43%) | 2801 | 0.0e+00
|
| ref|WP_047791630.1| PolC-type DNA polymerase III [Spiroplasma eriocheiris] | 613/1418 (43%) | 2781 | 0.0e+00
|
Maintained by Jun Ishikawa