General features

Gene IDMYPE9040
TypeCDS
From1215537
To1212412
Strand-
General name
DefinitionSNF2 family helicase
nt length3126
aa length1041
m.w.122909.19
COG[L] Replication, recombination and repair

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN020 yb95 helicase-like protein 23022:261143476.7e-105
mgenWP_010869292.1 DEAD/DEAH box helicase [Mycoplasma genitalium]3563.2e-108
mmobWP_011264833.1 DEAD/DEAH box helicase [Mycoplasma mobile]4122.1e-129
mgalWP_011113962.1 DEAD/DEAH box helicase family protein [Mycoplasma gallisepticum]3752.4e-114
bsubNP_391509.1 ATPase involved in RNA remodelling DNA recombination and repair [Bacillus subtilis subsp. subtilis str. 168]2811.7e-81
caceWP_010966278.1 MULTISPECIES: helicase [Clostridium]4366.3e-137

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mgal, Mycoplasma gallisepticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

SNF2_N1SNF2 family N-terminal domain595-861191.41.8e-56

Helicase_C1Helicase conserved C-terminal domain872-98478.44.9e-22

ERCC3_RAD25_C1ERCC3/RAD25/XPB C-terminal helicase868-100243.52.2e-11

SNF2_assoc1Bacterial SNF2 helicase associated238-56140.61.6e-10

ResIII1Type III restriction enzyme, res subunit587-73433.05.5e-08

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_011077724.1| DEAD/DEAH box helicase [Mycoplasma penetrans]1041/1041 (100%)53560.0e+00
ref|WP_129374428.1| DEAD/DEAH box helicase [Mycoplasma penetrans]1040/1041 (99%)53500.0e+00
ref|WP_004024778.1| DEAD/DEAH box helicase [Mycoplasma iowae]342/760 (45%)15470.0e+00
ref|WP_129692654.1| DEAD/DEAH box helicase [Mycoplasma iowae]341/760 (44%)15370.0e+00
ref|WP_051790203.1| DEAD/DEAH box helicase [Mycoplasma iowae]308/650 (47%)14520.0e+00
ref|WP_087220778.1| helicase SNF2 [Lachnoclostridium sp. An14]274/674 (40%)12917.1e-157
ref|WP_051594141.1| DEAD/DEAH box helicase [Butyrivibrio sp. AE3003]279/654 (42%)12533.3e-154
ref|WP_133529043.1| DEAD/DEAH box helicase family protein [Aminicella lysinilytica]288/698 (41%)12792.1e-153
ref|WP_119569498.1| DEAD/DEAH box helicase family protein [Inordinaticella fortuita]285/684 (41%)12594.8e-152
ref|WP_118027336.1| DEAD/DEAH box helicase family protein [Lactobacillus amylovorus]276/684 (40%)12621.9e-151

Maintained by Jun Ishikawa