General features
| Gene ID | MYPE8920
|
| Type | CDS
|
| From | 1200919
|
| To | 1200122
|
| Strand | -
|
| General name |
|
| Definition | RDD family domain-containing protein
|
| nt length | 798
|
| aa length | 265
|
| m.w. | 30817.73
|
| COG | [-] not in COGs
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN339 conserved hypothetical protein 403243:403917 | 44 | 3.8e-07
|
| mgen | WP_014894004.1 RDD family protein [Mycoplasma genitalium] | 48 | 1.3e-08
|
| mmob | WP_156768874.1 hypothetical protein [Mycoplasma mobile] | 35 | 4.9e-04
|
| mmyc | NP_975746.1 hypothetical protein MSC_0770 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 35 | 6.6e-04
|
| mgal | WP_011113627.1 RDD family protein [Mycoplasma gallisepticum] | 51 | 2.3e-09
|
| uure | WP_004026013.1 RDD family protein [Ureaplasma urealyticum] | 64 | 9.5e-14
|
| bsub | NP_391538.1 putative integral inner membrane protein [Bacillus subtilis subsp. subtilis str. 168] | 25 | 2.5e+00
|
| cace | WP_010966682.1 MULTISPECIES: isoprenylcysteine carboxylmethyltransferase family protein [Clostridium] | 26 | 1.3e+00
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RDD | 1 | RDD family | 16-158 | 32.8 | 7.1e-08
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077712.1| RDD family protein [Mycoplasma penetrans] | 264/265 (99%) | 1338 | 0.0e+00
|
| ref|WP_004025281.1| hypothetical protein [Mycoplasma iowae] | 92/254 (36%) | 346 | 8.0e-36
|
| ref|WP_027120159.1| RDD family protein [Mycoplasma testudinis] | 74/254 (29%) | 215 | 7.8e-17
|
| ref|WP_033159764.1| RDD family protein [Mycoplasma alvi] | 77/248 (31%) | 193 | 8.1e-14
|
| ref|WP_027121886.1| RDD family protein [Mycoplasma imitans] | 79/257 (30%) | 165 | 7.8e-10
|
| ref|WP_027124058.1| RDD family protein [Mycoplasma pirum] | 68/247 (27%) | 159 | 3.9e-09
|
| ref|WP_114119945.1| RDD family protein [Ureaplasma urealyticum] | 63/236 (26%) | 159 | 6.1e-09
|
| ref|WP_004026013.1| RDD family protein [Ureaplasma urealyticum] | 61/236 (25%) | 155 | 2.2e-08
|
| ref|WP_006688683.1| RDD family protein [Ureaplasma parvum] | 60/236 (25%) | 153 | 4.5e-08
|
| ref|WP_006689090.1| RDD family protein [Ureaplasma parvum] | 60/236 (25%) | 152 | 7.0e-08
|
Maintained by Jun Ishikawa