General features
| Gene ID | MYPE8890
|
| Type | CDS
|
| From | 1196921
|
| To | 1194933
|
| Strand | -
|
| General name | uvrB
|
| Definition | excinuclease ABC subunit B
|
| nt length | 1989
|
| aa length | 662
|
| m.w. | 76575.98
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN211 uvrB excinuclease ABC subunit B 259641:261614 | 661 | 0.0e+00
|
| mgen | WP_010869318.1 excinuclease ABC subunit B [Mycoplasma genitalium] | 689 | 0.0e+00
|
| mpul | WP_010924900.1 excinuclease ABC subunit UvrB [Mycoplasma pulmonis] | 674 | 0.0e+00
|
| mmob | WP_011265092.1 excinuclease ABC subunit UvrB [Mycoplasma mobile] | 671 | 0.0e+00
|
| mmyc | NP_975911.1 excinuclease ABC subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 714 | 0.0e+00
|
| mgal | WP_080512214.1 excinuclease ABC subunit UvrB [Mycoplasma gallisepticum] | 767 | 0.0e+00
|
| uure | WP_012560222.1 excinuclease ABC subunit UvrB [Ureaplasma urealyticum] | 764 | 0.0e+00
|
| phyt | WP_011160782.1 excinuclease ABC subunit B [Onion yellows phytoplasma] | 653 | 0.0e+00
|
| bsub | NP_391397.1 excinuclease ABC (subunit B) [Bacillus subtilis subsp. subtilis str. 168] | 686 | 0.0e+00
|
| cace | WP_010963824.1 MULTISPECIES: excinuclease ABC subunit UvrB [Clostridium] | 633 | 0.0e+00
|
| ecoli | NP_415300.1 excision nuclease subunit B [Escherichia coli str. K-12 substr. MG1655] | 615 | 0.0e+00
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| UvrB_inter | 1 | UvrB interaction domain | 167-252 | 78.6 | 2.9e-22
|
| UvrB | 1 | Ultra-violet resistance protein B | 556-597 | 78.2 | 3e-22
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 436-548 | 65.1 | 6.4e-18
|
| ResIII | 1 | Type III restriction enzyme, res subunit | 15-157 | 59.7 | 3.4e-16
|
| UVR | 1 | UvrB/uvrC motif | 627-659 | 30.3 | 2.4e-07
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077709.1| excinuclease ABC subunit UvrB [Mycoplasma penetrans] | 662/662 (100%) | 3492 | 0.0e+00
|
| ref|WP_004025004.1| excinuclease ABC subunit UvrB [Mycoplasma iowae] | 509/652 (78%) | 2688 | 0.0e+00
|
| ref|WP_052663038.1| excinuclease ABC subunit B [Mycoplasma pirum] | 411/659 (62%) | 2214 | 0.0e+00
|
| ref|WP_027120124.1| excinuclease ABC subunit B [Mycoplasma testudinis] | 412/654 (62%) | 2207 | 0.0e+00
|
| ref|WP_033159917.1| excinuclease ABC subunit B [Mycoplasma alvi] | 412/659 (62%) | 2130 | 0.0e+00
|
| ref|WP_027122307.1| excinuclease ABC subunit UvrB [Mycoplasma imitans] | 378/653 (57%) | 1994 | 0.0e+00
|
| ref|WP_014885797.1| excinuclease ABC subunit UvrB [Mycoplasma gallisepticum] | 380/653 (58%) | 1986 | 0.0e+00
|
| ref|WP_080512214.1| excinuclease ABC subunit UvrB [Mycoplasma gallisepticum] | 379/653 (58%) | 1981 | 0.0e+00
|
| ref|WP_085062011.1| excinuclease ABC subunit UvrB [Mycoplasma gallisepticum] | 379/653 (58%) | 1979 | 0.0e+00
|
| ref|WP_014886517.1| excinuclease ABC subunit UvrB [Mycoplasma gallisepticum] | 379/653 (58%) | 1978 | 0.0e+00
|
Maintained by Jun Ishikawa