General features
| Gene ID | MYPE8580
|
| Type | CDS
|
| From | 1155554
|
| To | 1156459
|
| Strand | +
|
| General name | potB
|
| Definition | spermidine/putrescine transport system permease PotB
|
| nt length | 906
|
| aa length | 301
|
| m.w. | 33250.52
|
| COG | [E] Amino acid transport and metabolism
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN056 potB spermidine/putrescine transport system permease 72088:72948 | 146 | 6.7e-44
|
| mgen | WP_010869304.1 ABC transporter permease [Mycoplasma genitalium] | 142 | 1.7e-42
|
| mpul | WP_010925225.1 ABC transporter permease [Mycoplasma pulmonis] | 111 | 2.3e-30
|
| mmob | WP_041362733.1 ABC transporter permease subunit [Mycoplasma mobile] | 100 | 2.2e-26
|
| mmyc | NP_975226.1 spermidine/putrescine ABC transporter permease [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 82 | 1.7e-19
|
| mgal | WP_041594299.1 ABC transporter permease [Mycoplasma gallisepticum] | 207 | 5.8e-67
|
| uure | WP_004026353.1 ABC transporter permease [Ureaplasma urealyticum] | 232 | 1.2e-76
|
| phyt | WP_011161004.1 ABC transporter permease [Onion yellows phytoplasma] | 85 | 5.3e-21
|
| cace | WP_010964157.1 MULTISPECIES: ABC transporter permease [Clostridium] | 76 | 3.7e-17
|
| ecoli | NP_415643.3 spermidine preferential ABC transporter membrane subunit PotB [Escherichia coli str. K-12 substr. MG1655] | 96 | 3.4e-24
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| BPD_transp_1 | 1 | Binding-protein-dependent transport system inner membrane component | 94-280 | 52.0 | 6.9e-14
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_129374414.1| ABC transporter permease subunit [Mycoplasma penetrans] | 300/301 (99%) | 1521 | 0.0e+00
|
| ref|WP_152023107.1| ABC transporter permease subunit [Mycoplasma penetrans] | 275/276 (99%) | 1399 | 0.0e+00
|
| ref|WP_158091470.1| ABC transporter permease subunit [Mycoplasma iowae] | 145/262 (55%) | 744 | 4.0e-95
|
| ref|WP_129692687.1| ABC transporter permease subunit [Mycoplasma iowae] | 158/293 (53%) | 736 | 1.7e-93
|
| ref|WP_159402902.1| ABC transporter permease subunit [Mycoplasma iowae] | 158/291 (54%) | 732 | 6.2e-93
|
| ref|WP_051790248.1| ABC transporter permease subunit [Mycoplasma iowae] | 150/273 (54%) | 718 | 5.6e-91
|
| ref|WP_031488790.1| ABC transporter permease [Ureaplasma canigenitalium] | 123/294 (41%) | 611 | 6.0e-74
|
| ref|WP_081847785.1| ABC transporter permease [Ureaplasma diversum] | 119/275 (43%) | 600 | 5.0e-72
|
| ref|WP_004025596.1| ABC transporter permease [Ureaplasma urealyticum] | 119/274 (43%) | 593 | 2.2e-71
|
| ref|WP_004026353.1| ABC transporter permease [Ureaplasma urealyticum] | 119/274 (43%) | 592 | 3.0e-71
|
Maintained by Jun Ishikawa