General features

Gene IDMYPE8230
TypeCDS
From1103999
To1103478
Strand-
General namehsdR
Definitiontype I restriction-modification system R subunit, partial
nt length522
aa length173
m.w.19890.55
COG[L] Replication, recombination and repair

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mmycNP_975602.1 hypothetical protein MSC_0622 [Mycoplasma mycoides subsp. mycoides SC str. PG1]287.8e-02
uureWP_004025522.1 UPF0104 family protein [Ureaplasma urealyticum]255.1e-01
caceWP_010963869.1 MULTISPECIES: ImmA/IrrE family metallo-endopeptidase [Clostridium]268.5e-01

*mmyc, Mycoplasma mycoides; uure, Ureaplasma urealyticum; cace, Clostridium acetobutylicum;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

HSDR_N_21Type I restriction enzyme R protein N terminus (HSDR_N)9-12747.31.8e-12

HSDR_N1Type I restriction enzyme R protein N terminus (HSDR_N)43-11739.17.4e-10

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_129374529.1| DEAD/DEAH box helicase family protein [Mycoplasma penetrans]161/161 (100%)8506.2e-107
ref|WP_060823244.1| DEAD/DEAH box helicase family protein [Mycoplasma arginini]90/154 (58%)4682.8e-51
ref|WP_092154740.1| DEAD/DEAH box helicase family protein [Desulfovibrio legallii]76/159 (47%)3647.0e-37
ref|WP_009658745.1| DEAD/DEAH box helicase family protein [Selenomonas sp. FOBRC9]78/159 (49%)3602.4e-36
ref|WP_116668911.1| DEAD/DEAH box helicase family protein [Methanobrevibacter woesei]79/150 (52%)3602.7e-36
ref|WP_156989497.1| DEAD/DEAH box helicase family protein [Caprobacter fermentans]77/157 (49%)3593.6e-36
ref|WP_138342230.1| DEAD/DEAH box helicase family protein [Intestinibacter bartlettii]79/159 (49%)3585.4e-36
ref|WP_120394819.1| DEAD/DEAH box helicase family protein [bacterium 1xD42-67]77/156 (49%)3541.6e-35
ref|WP_069726793.1| DEAD/DEAH box helicase family protein [Brachyspira hampsonii]73/149 (48%)3541.8e-35
ref|WP_031587553.1| hypothetical protein [Selenomonas bovis]67/135 (49%)3263.3e-35

Maintained by Jun Ishikawa