General features
| Gene ID | MYPE8210
|
| Type | CDS
|
| From | 1101637
|
| To | 1100165
|
| Strand | -
|
| General name | hsdM
|
| Definition | type I restriction-modification system M subunit
|
| nt length | 1473
|
| aa length | 490
|
| m.w. | 57311.97
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN342 hsdM type I restriction enzyme HsdM 407861:409492 | 104 | 1.4e-25
|
| mpul | WP_010925234.1 type I restriction-modification system subunit M [Mycoplasma pulmonis] | 90 | 5.1e-21
|
| mmob | WP_011264804.1 type I restriction-modification system subunit M [Mycoplasma mobile] | 90 | 5.7e-21
|
| mmyc | NP_975218.1 Sun family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 30 | 6.8e-02
|
| mgal | WP_011113943.1 type I restriction-modification system subunit M [Mycoplasma gallisepticum] | 61 | 2.1e-11
|
| uure | WP_012560330.1 type I restriction-modification system subunit M [Ureaplasma urealyticum] | 103 | 1.9e-25
|
| phyt | WP_011160968.1 type I restriction-modification system methyltransferase subunit [Onion yellows phytoplasma] | 42 | 7.1e-07
|
| bsub | NP_390099.1 m(7)G2069 methylase of 23S rRNA [Bacillus subtilis subsp. subtilis str. 168] | 31 | 1.5e-01
|
| cace | WP_010965606.1 MULTISPECIES: class I SAM-dependent DNA methyltransferase [Clostridium] | 41 | 8.6e-05
|
| ecoli | NP_418769.1 type I restriction enzyme EcoKI methyltransferase component [Escherichia coli str. K-12 substr. MG1655] | 127 | 1.0e-32
|
*mpne, Mycoplasma pneumoniae; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| N6_Mtase | 1 | N-6 DNA Methylase | 143-448 | 224.8 | 1.6e-66
|
| HsdM_N | 1 | HsdM N-terminal domain | 5-133 | 44.7 | 1.9e-11
|
| Eco57I | 1 | Eco57I restriction-modification methylase | 269-371 | 22.5 | 0.00012
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077643.1| SAM-dependent DNA methyltransferase [Mycoplasma penetrans] | 490/490 (100%) | 2606 | 0.0e+00
|
| ref|WP_129374530.1| SAM-dependent DNA methyltransferase [Mycoplasma penetrans] | 488/490 (99%) | 2598 | 0.0e+00
|
| ref|WP_013526951.1| MULTISPECIES: SAM-dependent DNA methyltransferase [Mycoplasma] | 356/488 (72%) | 1910 | 0.0e+00
|
| ref|WP_060823245.1| SAM-dependent DNA methyltransferase [Mycoplasma arginini] | 347/476 (72%) | 1889 | 0.0e+00
|
| ref|WP_005605245.1| SAM-dependent DNA methyltransferase [Actinobacillus pleuropneumoniae] | 326/485 (67%) | 1859 | 0.0e+00
|
| ref|WP_138308474.1| SAM-dependent DNA methyltransferase [Flavonifractor plautii] | 329/485 (67%) | 1859 | 0.0e+00
|
| ref|WP_157395366.1| N-6 DNA methylase [Ursidibacter arcticus] | 323/485 (66%) | 1844 | 0.0e+00
|
| ref|WP_077475013.1| SAM-dependent DNA methyltransferase [Rodentibacter ratti] | 322/485 (66%) | 1841 | 0.0e+00
|
| ref|WP_135710045.1| SAM-dependent DNA methyltransferase [Actinobacillus porcinus] | 321/485 (66%) | 1829 | 0.0e+00
|
| ref|WP_078218871.1| SAM-dependent DNA methyltransferase [Haemophilus haemoglobinophilus] | 318/485 (65%) | 1828 | 0.0e+00
|
Maintained by Jun Ishikawa