General features
| Gene ID | MYPE8130
|
| Type | CDS
|
| From | 1091691
|
| To | 1090864
|
| Strand | -
|
| General name |
|
| Definition | DNA polymerase III subunit delta
|
| nt length | 828
|
| aa length | 275
|
| m.w. | 32654.61
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN007 holB DNA-polymerase-like protein 9184:9945 | 92 | 5.7e-24
|
| mgen | WP_009885556.1 DNA polymerase III subunit delta' [Mycoplasma genitalium] | 67 | 5.8e-15
|
| mpul | WP_010924857.1 AAA family ATPase [Mycoplasma pulmonis] | 60 | 2.6e-12
|
| mmob | WP_011265046.1 DNA polymerase III subunit delta' [Mycoplasma mobile] | 56 | 7.1e-11
|
| mmyc | NP_975056.1 DNA polymerase III subunit delta [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 56 | 4.1e-11
|
| mgal | WP_011113983.1 DNA polymerase III subunit delta' [Mycoplasma gallisepticum] | 93 | 2.5e-24
|
| uure | WP_004027064.1 DNA polymerase III subunit delta [Ureaplasma urealyticum] | 68 | 2.2e-15
|
| phyt | WP_011160606.1 MULTISPECIES: DNA polymerase III subunit delta' [Candidatus Phytoplasma asteris] | 33 | 1.1e-03
|
| bsub | NP_387912.1 DNA polymerase III clamp loader delta' subunit [Bacillus subtilis subsp. subtilis str. 168] | 69 | 1.3e-14
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_pol3_delta2 | 1 | DNA polymerase III, delta subunit | 19-153 | 98.4 | 3.5e-28
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077635.1| DNA polymerase III subunit delta' [Mycoplasma penetrans] | 275/275 (100%) | 1392 | 0.0e+00
|
| ref|WP_004025114.1| DNA polymerase III subunit delta' [Mycoplasma iowae] | 99/274 (36%) | 379 | 2.6e-40
|
| ref|WP_052664016.1| DNA polymerase III subunit delta' [Mycoplasma alvi] | 84/259 (32%) | 279 | 1.2e-25
|
| ref|WP_014574831.1| DNA polymerase III subunit delta' [Mycoplasma gallisepticum] | 73/222 (32%) | 253 | 4.5e-22
|
| ref|WP_065165512.1| DNA polymerase III subunit delta' [Mycoplasma gallisepticum] | 71/222 (31%) | 244 | 9.4e-21
|
| ref|WP_011883586.1| DNA polymerase III subunit delta' [Mycoplasma gallisepticum] | 72/222 (32%) | 238 | 6.3e-20
|
| ref|WP_014574840.1| DNA polymerase III subunit delta' [Mycoplasma pneumoniae] | 70/258 (27%) | 232 | 3.8e-19
|
| ref|WP_011113983.1| DNA polymerase III subunit delta' [Mycoplasma gallisepticum] | 71/222 (31%) | 232 | 5.4e-19
|
| ref|WP_027333144.1| DNA polymerase III subunit delta' [Mycoplasma gallisepticum] | 71/222 (31%) | 230 | 8.4e-19
|
| ref|WP_010874364.1| DNA polymerase III subunit delta' [Mycoplasma pneumoniae] | 69/258 (26%) | 228 | 1.5e-18
|
Maintained by Jun Ishikawa