General features
| Gene ID | MYPE8030
|
| Type | CDS
|
| From | 1080587
|
| To | 1079214
|
| Strand | -
|
| General name | deaD
|
| Definition | ATP-dependent RNA helicase
|
| nt length | 1374
|
| aa length | 457
|
| m.w. | 53539.81
|
| COG | [R] General function prediction only
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN443 deaD RNA helicase, eIF4-A translation initiation factor 537755:536526 | 160 | 2.3e-46
|
| mgen | WP_010869422.1 DEAD/DEAH box helicase [Mycoplasma genitalium] | 160 | 1.9e-46
|
| mpul | WP_158304714.1 DEAD/DEAH box helicase [Mycoplasma pulmonis] | 124 | 1.8e-32
|
| mmob | WP_011264800.1 DEAD/DEAH box helicase [Mycoplasma mobile] | 130 | 1.1e-34
|
| mmyc | NP_975455.1 ATP-dependent RNA helicase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 216 | 8.7e-67
|
| mgal | WP_011113753.1 DEAD/DEAH box helicase [Mycoplasma gallisepticum] | 285 | 3.9e-93
|
| uure | WP_004025616.1 DEAD/DEAH box helicase [Ureaplasma urealyticum] | 334 | 1.8e-112
|
| phyt | WP_011161056.1 DNA helicase [Onion yellows phytoplasma] | 155 | 9.8e-44
|
| bsub | NP_388339.2 ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. subtilis str. 168] | 155 | 3.0e-43
|
| cace | WP_010966035.1 MULTISPECIES: DEAD/DEAH box helicase [Clostridium] | 151 | 1.1e-41
|
| ecoli | NP_417631.2 ATP-dependent RNA helicase DeaD [Escherichia coli str. K-12 substr. MG1655] | 145 | 9.9e-39
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DEAD | 1 | DEAD/DEAH box helicase | 25-188 | 106.6 | 1.1e-30
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 228-335 | 83.0 | 1.8e-23
|
| ResIII | 1 | Type III restriction enzyme, res subunit | 21-185 | 38.5 | 1.1e-09
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077625.1| DEAD/DEAH box helicase [Mycoplasma penetrans] | 457/457 (100%) | 2386 | 0.0e+00
|
| ref|WP_004024872.1| DEAD/DEAH box helicase [Mycoplasma iowae] | 241/456 (52%) | 1114 | 6.1e-146
|
| ref|WP_036452032.1| DEAD/DEAH box helicase [Mycoplasma iowae] | 240/456 (52%) | 1111 | 1.8e-145
|
| ref|WP_004025616.1| DEAD/DEAH box helicase [Ureaplasma urealyticum] | 190/433 (43%) | 856 | 4.1e-107
|
| ref|WP_141926418.1| DEAD/DEAH box helicase [Ureaplasma urealyticum] | 193/433 (44%) | 851 | 2.0e-106
|
| ref|WP_006688762.1| DEAD/DEAH box helicase [Ureaplasma parvum] | 184/428 (42%) | 829 | 3.8e-103
|
| ref|WP_045470350.1| DEAD/DEAH box helicase [Ureaplasma parvum] | 184/428 (42%) | 828 | 5.7e-103
|
| ref|WP_156021871.1| DEAD/DEAH box helicase [Ureaplasma diversum] | 179/447 (40%) | 804 | 2.6e-99
|
| ref|WP_031488888.1| DEAD/DEAH box helicase [Ureaplasma canigenitalium] | 183/444 (41%) | 790 | 3.5e-97
|
| ref|WP_033159726.1| DEAD/DEAH box helicase [Mycoplasma alvi] | 181/443 (40%) | 740 | 1.2e-89
|
Maintained by Jun Ishikawa