General features
| Gene ID | MYPE800
|
| Type | CDS
|
| From | 92365
|
| To | 96231
|
| Strand | +
|
| General name | rpoC
|
| Definition | DNA-directed RNA polymerase subunit beta'
|
| nt length | 3867
|
| aa length | 1288
|
| m.w. | 145304.54
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN515 rpoC DNA-directed RNA polymerase beta' chain 632282:628410 | 1586 | 0.0e+00
|
| mgen | WP_010869441.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma genitalium] | 1574 | 0.0e+00
|
| mpul | WP_010925346.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma pulmonis] | 554 | 1.1e-175
|
| mmob | WP_011264802.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma mobile] | 569 | 0.0e+00
|
| mmyc | NP_975974.1 DNA-directed RNA polymerase subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 1240 | 0.0e+00
|
| mgal | WP_011113455.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma gallisepticum] | 1692 | 0.0e+00
|
| uure | WP_004026159.1 DNA-directed RNA polymerase subunit beta' [Ureaplasma urealyticum] | 1602 | 0.0e+00
|
| phyt | WP_011160635.1 DNA-directed RNA polymerase subunit beta' [Onion yellows phytoplasma] | 1031 | 0.0e+00
|
| bsub | NP_387989.2 RNA polymerase (beta' subunit) [Bacillus subtilis subsp. subtilis str. 168] | 1171 | 0.0e+00
|
| cace | WP_010966420.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Clostridium] | 1082 | 0.0e+00
|
| ecoli | NP_418415.1 RNA polymerase subunit beta' [Escherichia coli str. K-12 substr. MG1655] | 847 | 0.0e+00
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RNA_pol_Rpb1_1 | 1 | RNA polymerase Rpb1, domain 1 | 6-395 | 309.9 | 2e-92
|
| RNA_pol_Rpb1_5 | 1 | RNA polymerase Rpb1, domain 5 | 855-1178 | 191.4 | 2e-56
|
| RNA_pol_Rpb1_2 | 1 | RNA polymerase Rpb1, domain 2 | 397-547 | 150.4 | 5.2e-44
|
| RNA_pol_Rpb1_3 | 1 | RNA polymerase Rpb1, domain 3 | 551-733 | 92.3 | 2.8e-26
|
| RNA_pol_Rpb1_4 | 1 | RNA polymerase Rpb1, domain 4 | 762-853 | 58.1 | 7e-16
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076906.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma penetrans] | 1288/1288 (100%) | 6791 | 0.0e+00
|
| ref|WP_036451497.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma iowae] | 1054/1286 (81%) | 5612 | 0.0e+00
|
| ref|WP_004024768.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma iowae] | 1053/1286 (81%) | 5606 | 0.0e+00
|
| ref|WP_129692702.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma iowae] | 1052/1286 (81%) | 5597 | 0.0e+00
|
| ref|WP_027119742.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma testudinis] | 846/1287 (65%) | 4537 | 0.0e+00
|
| ref|WP_033159663.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma alvi] | 857/1286 (66%) | 4533 | 0.0e+00
|
| ref|WP_052663111.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma pirum] | 850/1285 (66%) | 4493 | 0.0e+00
|
| ref|WP_014886544.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma gallisepticum] | 830/1282 (64%) | 4385 | 0.0e+00
|
| ref|WP_151059616.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma gallisepticum] | 829/1282 (64%) | 4384 | 0.0e+00
|
| ref|WP_065165846.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma gallisepticum] | 830/1282 (64%) | 4384 | 0.0e+00
|
Maintained by Jun Ishikawa