General features
| Gene ID | MYPE790
|
| Type | CDS
|
| From | 88217
|
| To | 92344
|
| Strand | +
|
| General name | rpoB
|
| Definition | DNA-directed RNA polymerase subunit beta
|
| nt length | 4128
|
| aa length | 1375
|
| m.w. | 154731.28
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN516 rpoB RNA polymerase beta subunit 636461:632286 | 1465 | 0.0e+00
|
| mgen | WP_009885798.1 DNA-directed RNA polymerase subunit beta [Mycoplasma genitalium] | 1481 | 0.0e+00
|
| mpul | WP_010925347.1 DNA-directed RNA polymerase subunit beta [Mycoplasma pulmonis] | 718 | 0.0e+00
|
| mmob | WP_011264801.1 DNA-directed RNA polymerase subunit beta [Mycoplasma mobile] | 670 | 0.0e+00
|
| mmyc | NP_975973.1 DNA-directed RNA polymerase subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 818 | 0.0e+00
|
| mgal | WP_011113454.1 DNA-directed RNA polymerase subunit beta [Mycoplasma gallisepticum] | 1584 | 0.0e+00
|
| uure | WP_004025875.1 DNA-directed RNA polymerase subunit beta [Ureaplasma urealyticum] | 1464 | 0.0e+00
|
| phyt | WP_011160634.1 DNA-directed RNA polymerase subunit beta [Onion yellows phytoplasma] | 658 | 0.0e+00
|
| bsub | NP_387988.2 RNA polymerase (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] | 808 | 0.0e+00
|
| cace | WP_010966421.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Clostridium] | 665 | 0.0e+00
|
| ecoli | NP_418414.1 RNA polymerase subunit beta [Escherichia coli str. K-12 substr. MG1655] | 543 | 8.3e-171
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RNA_pol_Rpb2_6 | 1 | RNA polymerase Rpb2, domain 6 | 794-1259 | 487.8 | 2.3e-146
|
| RNA_pol_Rpb2_3 | 1 | RNA polymerase Rpb2, domain 3 | 586-653 | 92.6 | 1.3e-26
|
| RNA_pol_Rpb2_7 | 1 | RNA polymerase Rpb2, domain 7 | 1261-1335 | 88.4 | 3.1e-25
|
| RNA_pol_Rpb2_45 | 1 | RNA polymerase beta subunit external 1 domain | 664-728 | 61.4 | 7.2e-17
|
| RNA_pol_Rpb2_2 | 1 | RNA polymerase Rpb2, domain 2 | 467-513 | 45.2 | 7.9e-12
|
| RNA_pol_Rpb2_1 | 1 | RNA polymerase beta subunit | 32-383 | 44.6 | 1.1e-11
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076905.1| DNA-directed RNA polymerase subunit beta [Mycoplasma penetrans] | 1375/1375 (100%) | 7245 | 0.0e+00
|
| ref|WP_004024769.1| DNA-directed RNA polymerase subunit beta [Mycoplasma iowae] | 1014/1374 (73%) | 5316 | 0.0e+00
|
| ref|WP_036451498.1| DNA-directed RNA polymerase subunit beta [Mycoplasma iowae] | 1012/1374 (73%) | 5307 | 0.0e+00
|
| ref|WP_052663456.1| DNA-directed RNA polymerase subunit beta [Mycoplasma testudinis] | 827/1363 (60%) | 4184 | 0.0e+00
|
| ref|WP_052663112.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pirum] | 820/1373 (59%) | 4164 | 0.0e+00
|
| ref|WP_027122137.1| DNA-directed RNA polymerase subunit beta [Mycoplasma imitans] | 804/1329 (60%) | 4126 | 0.0e+00
|
| ref|WP_014574323.1| DNA-directed RNA polymerase subunit beta [Mycoplasma gallisepticum] | 808/1346 (60%) | 4110 | 0.0e+00
|
| ref|WP_117273966.1| DNA-directed RNA polymerase subunit beta [Mycoplasma gallisepticum] | 805/1329 (60%) | 4103 | 0.0e+00
|
| ref|WP_011113454.1| DNA-directed RNA polymerase subunit beta [Mycoplasma gallisepticum] | 804/1329 (60%) | 4101 | 0.0e+00
|
| ref|WP_151059615.1| DNA-directed RNA polymerase subunit beta [Mycoplasma gallisepticum] | 804/1329 (60%) | 4100 | 0.0e+00
|
Maintained by Jun Ishikawa