General features
| Gene ID | MYPE7550
|
| Type | CDS
|
| From | 992241
|
| To | 991633
|
| Strand | -
|
| General name | rpsD
|
| Definition | 30S ribosomal protein S4
|
| nt length | 609
|
| aa length | 202
|
| m.w. | 23218.89
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN446 rpsD ribosomal protein S4 543281:542664 | 238 | 4.4e-82
|
| mgen | WP_009885889.1 30S ribosomal protein S4 [Mycoplasma genitalium] | 228 | 1.9e-78
|
| mpul | WP_010925517.1 30S ribosomal protein S4 [Mycoplasma pulmonis] | 194 | 6.1e-65
|
| mmob | WP_011264589.1 30S ribosomal protein S4 [Mycoplasma mobile] | 218 | 1.7e-74
|
| mmyc | NP_975277.1 30S ribosomal protein S4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 227 | 7.8e-78
|
| mgal | WP_011113789.1 30S ribosomal protein S4 [Mycoplasma gallisepticum] | 243 | 6.5e-84
|
| uure | WP_004025550.1 30S ribosomal protein S4 [Ureaplasma urealyticum] | 258 | 3.0e-90
|
| bsub | NP_390844.1 ribosomal protein S4 (BS4) [Bacillus subtilis subsp. subtilis str. 168] | 181 | 3.1e-59
|
| cace | WP_010966386.1 MULTISPECIES: 30S ribosomal protein S4 [Clostridium] | 128 | 3.2e-38
|
| ecoli | NP_417755.1 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] | 132 | 7.0e-40
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S4 | 1 | Ribosomal protein S4/S9 N-terminal domain | 3-88 | 76.5 | 2.4e-21
|
| S4 | 1 | S4 domain | 95-141 | 65.1 | 3.4e-18
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077578.1| 30S ribosomal protein S4 [Mycoplasma penetrans] | 202/202 (100%) | 1080 | 8.1e-149
|
| ref|WP_004024977.1| 30S ribosomal protein S4 [Mycoplasma iowae] | 158/202 (78%) | 835 | 1.7e-111
|
| ref|WP_038101949.1| 30S ribosomal protein S4 [Ureaplasma diversum] | 130/202 (64%) | 669 | 3.3e-86
|
| ref|WP_004025550.1| 30S ribosomal protein S4 [Ureaplasma urealyticum] | 128/202 (63%) | 660 | 7.1e-85
|
| ref|WP_004027357.1| 30S ribosomal protein S4 [Ureaplasma urealyticum] | 128/202 (63%) | 659 | 9.4e-85
|
| ref|WP_006688490.1| 30S ribosomal protein S4 [Ureaplasma parvum] | 127/202 (62%) | 658 | 1.3e-84
|
| ref|WP_027119385.1| 30S ribosomal protein S4 [Mycoplasma testudinis] | 124/202 (61%) | 652 | 1.5e-83
|
| ref|WP_031489298.1| 30S ribosomal protein S4 [Ureaplasma canigenitalium] | 126/202 (62%) | 647 | 6.3e-83
|
| ref|WP_033160277.1| 30S ribosomal protein S4 [Mycoplasma alvi] | 120/202 (59%) | 633 | 9.8e-81
|
| ref|WP_027123941.1| 30S ribosomal protein S4 [Mycoplasma pirum] | 118/202 (58%) | 622 | 4.0e-79
|
Maintained by Jun Ishikawa