General features
| Gene ID | MPN541
|
| Type | CDS
|
| From | 661126
|
| To | 660863
|
| Strand | -
|
| General name | rpsT
|
| Definition | ribosomal protein S20
|
| nt length | 264
|
| aa length | 87
|
| m.w. | 9970.49
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE480 rpsT ribosomal protein S20 59137:58901 | 44 | 5.1e-09
|
| mgen | WP_009885821.1 30S ribosomal protein S20 [Mycoplasma genitalium] | 130 | 4.1e-43
|
| mmob | WP_011265040.1 30S ribosomal protein S20 [Mycoplasma mobile] | 25 | 4.7e-02
|
| mmyc | NP_975096.3 30S ribosomal protein S20 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 38 | 8.4e-07
|
| mgal | WP_011113356.1 30S ribosomal protein S20 [Mycoplasma gallisepticum] | 59 | 4.3e-15
|
| uure | WP_004025931.1 30S ribosomal protein S20 [Ureaplasma urealyticum] | 42 | 1.6e-08
|
| phyt | WP_011160456.1 MULTISPECIES: 30S ribosomal protein S20 [Candidatus Phytoplasma asteris] | 28 | 3.3e-03
|
| bsub | NP_390433.2 ribosomal protein S20 (BS20) [Bacillus subtilis subsp. subtilis str. 168] | 31 | 2.0e-03
|
| cace | WP_010964586.1 MULTISPECIES: 30S ribosomal protein S20 [Clostridium] | 43 | 5.3e-08
|
| ecoli | NP_414564.1 30S ribosomal subunit protein S20 [Escherichia coli str. K-12 substr. MG1655] | 34 | 1.3e-04
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S20p | 1 | Ribosomal protein S20 | 2-76 | 55.3 | 7.7e-15
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874898.1| 30S ribosomal protein S20 [Mycoplasma pneumoniae] | 87/87 (100%) | 426 | 8.2e-53
|
| ref|WP_014325593.1| 30S ribosomal protein S20 [Mycoplasma pneumoniae] | 86/87 (98%) | 421 | 3.6e-52
|
| ref|WP_009885821.1| 30S ribosomal protein S20 [Mycoplasma genitalium] | 67/87 (77%) | 326 | 1.4e-37
|
| ref|WP_014575021.1| 30S ribosomal protein S20, partial [Mycoplasma pneumoniae] | 54/56 (96%) | 273 | 6.4e-30
|
| ref|WP_027119653.1| 30S ribosomal protein S20 [Mycoplasma testudinis] | 44/78 (56%) | 210 | 5.3e-20
|
| ref|WP_033160219.1| hypothetical protein [Mycoplasma alvi] | 38/78 (48%) | 169 | 9.4e-14
|
| ref|WP_011883834.1| 30S ribosomal protein S20 [Mycoplasma gallisepticum] | 38/71 (53%) | 144 | 6.9e-10
|
| ref|WP_027122382.1| 30S ribosomal protein S20 [Mycoplasma imitans] | 38/71 (53%) | 143 | 8.1e-10
|
| ref|WP_151029657.1| 30S ribosomal protein S20 [Mycoplasma gallisepticum] | 38/71 (53%) | 143 | 8.3e-10
|
| ref|WP_065165812.1| 30S ribosomal protein S20 [Mycoplasma gallisepticum] | 38/71 (53%) | 143 | 8.7e-10
|
Maintained by Jun Ishikawa