General features

Gene IDMYPE5290
TypeCDS
From671800
To673689
Strand+
General name
Definitionconserved hypothetical protein
nt length1890
aa length629
m.w.71332.18
COG[R] General function prediction only

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN280 single stranded RNA(DNA) processing enzyme-like protein 331360:3330695350.0e+00
mgenWP_009885694.1 ribonuclease J [Mycoplasma genitalium]5430.0e+00
mpulWP_010925505.1 ribonuclease J [Mycoplasma pulmonis]4132.0e-138
mmobWP_011265138.1 ribonuclease J [Mycoplasma mobile]4101.4e-137
mmycNP_975648.1 hypothetical protein MSC_0670 [Mycoplasma mycoides subsp. mycoides SC str. PG1]4378.2e-148
mgalWP_011113249.1 ribonuclease J [Mycoplasma gallisepticum]5900.0e+00
uureWP_004025795.1 ribonuclease J [Ureaplasma urealyticum]5950.0e+00
phytWP_011160982.1 MULTISPECIES: ribonuclease J [Candidatus Phytoplasma asteris]3909.6e-131
bsubNP_389336.1 ribonuclease J1 [Bacillus subtilis subsp. subtilis str. 168]4022.3e-134
caceWP_010964990.1 MULTISPECIES: ribonuclease J [Clostridium]3335.4e-108
ecoliNP_415433.4 conserved inner membrane protein YcaI [Escherichia coli str. K-12 substr. MG1655]333.7e-02

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result:



ModelNo.Descrip tionPosition (aa)ScoreE-value

Lactamase_B1Metallo-beta-lactamase superfamily86-24462.84.1e-17

Lactamase_B_21Beta-lactamase superfamily domain129-23645.46.3e-12

RMMBL1Zn-dependent metallo-hydrolase RNA specificity domain433-47844.61e-11

RNase_J_C1Ribonuclease J C-terminal domain555-62738.32.1e-09

BLAST search result (top 10 hits)

ID DescriptionIdentityScoreE-value
ref|WP_011077353.1| ribonuclease J [Mycoplasma penetrans]629/629 (100%)33080.0e+00
ref|WP_129692737.1| RNase J family beta-CASP ribonuclease [Mycoplasma iowae]383/620 (61%)20020.0e+00
ref|WP_144240885.1| RNase J family beta-CASP ribonuclease [Mycoplasma iowae]382/620 (61%)19950.0e+00
ref|WP_006688514.1| ribonuclease J [Ureaplasma parvum]295/556 (53%)15700.0e+00
ref|WP_088437603.1| ribonuclease J [Ureaplasma parvum]293/551 (53%)15660.0e+00
ref|WP_006689021.1| ribonuclease J [Ureaplasma parvum]293/551 (53%)15650.0e+00
ref|WP_038103413.1| ribonuclease J [Ureaplasma diversum]288/555 (51%)15640.0e+00
ref|WP_027122289.1| ribonuclease J [Mycoplasma imitans]275/552 (49%)15430.0e+00
ref|WP_027119451.1| ribonuclease J [Mycoplasma testudinis]280/552 (50%)15420.0e+00
ref|WP_004025795.1| ribonuclease J [Ureaplasma urealyticum]287/541 (53%)15340.0e+00

Maintained by Jun Ishikawa