General features
| Gene ID | MPN521
|
| Type | CDS
|
| From | 642760
|
| To | 643260
|
| Strand | +
|
| General name | ygl3
|
| Definition | putative rRNA methylase
|
| nt length | 501
|
| aa length | 166
|
| m.w. | 19356.13
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE100 cspR rRNA methylase 13682:14167 | 144 | 6.4e-46
|
| mgen | WP_009885804.1 tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL [Mycoplasma genitalium] | 288 | 3.0e-103
|
| mpul | WP_010925107.1 tRNA (cytidine(34)-2'-O)-methyltransferase [Mycoplasma pulmonis] | 107 | 7.3e-32
|
| mmob | WP_011264641.1 tRNA (cytidine(34)-2'-O)-methyltransferase [Mycoplasma mobile] | 108 | 4.7e-32
|
| mmyc | NP_975595.1 rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 112 | 2.7e-33
|
| mgal | WP_011113559.1 tRNA (cytidine(34)-2'-O)-methyltransferase [Mycoplasma gallisepticum] | 154 | 3.2e-50
|
| uure | WP_004025546.1 tRNA (cytidine(34)-2'-O)-methyltransferase [Ureaplasma urealyticum] | 132 | 2.4e-41
|
| bsub | NP_388774.2 tRNA (cytidine(34)-2'-O)-methyltransferase [Bacillus subtilis subsp. subtilis str. 168] | 129 | 8.9e-40
|
| cace | WP_010964019.1 MULTISPECIES: tRNA (cytidine(34)-2'-O)-methyltransferase [Clostridium] | 109 | 6.2e-32
|
| ecoli | NP_418063.1 tRNA (cytidine/uridine-2'-O)-ribose methyltransferase [Escherichia coli str. K-12 substr. MG1655] | 115 | 2.8e-34
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| SpoU_methylase | 1 | SpoU rRNA Methylase family | 6-150 | 106.2 | 1.5e-30
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874877.1| tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2... [Mycoplasma pneu... | 166/166 (100%) | 901 | 7.9e-123
|
| ref|WP_009885804.1| tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2... [Mycoplasma geni... | 132/166 (79%) | 737 | 1.0e-97
|
| ref|WP_014894676.1| tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2... [Mycoplasma geni... | 131/166 (78%) | 733 | 4.3e-97
|
| ref|WP_036448816.1| tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2... [Mycoplasma piru... | 79/159 (49%) | 463 | 6.1e-56
|
| ref|WP_052663373.1| tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2... [Mycoplasma test... | 81/156 (51%) | 456 | 6.6e-55
|
| ref|WP_084268998.1| tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2... [Mycoplasma alvi... | 75/160 (46%) | 423 | 5.1e-50
|
| ref|WP_151029762.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Mycoplasma gallisepticum] | 71/158 (44%) | 394 | 1.2e-45
|
| ref|WP_065164984.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Mycoplasma gallisepticum] | 70/158 (44%) | 394 | 1.2e-45
|
| ref|WP_014574663.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Mycoplasma gallisepticum] | 70/158 (44%) | 392 | 2.4e-45
|
| ref|WP_014885985.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Mycoplasma gallisepticum] | 70/158 (44%) | 392 | 2.4e-45
|
Maintained by Jun Ishikawa