General features
| Gene ID | MPN516
|
| Type | CDS
|
| From | 636461
|
| To | 632286
|
| Strand | -
|
| General name | rpoB
|
| Definition | RNA polymerase beta subunit
|
| nt length | 4176
|
| aa length | 1391
|
| m.w. | 155620.19
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE790 rpoB DNA-directed RNA polymerase subunit beta 88217:92344 | 1448 | 0.0e+00
|
| mgen | WP_009885798.1 DNA-directed RNA polymerase subunit beta [Mycoplasma genitalium] | 2460 | 0.0e+00
|
| mpul | WP_010925347.1 DNA-directed RNA polymerase subunit beta [Mycoplasma pulmonis] | 633 | 0.0e+00
|
| mmob | WP_011264801.1 DNA-directed RNA polymerase subunit beta [Mycoplasma mobile] | 649 | 0.0e+00
|
| mmyc | NP_975973.1 DNA-directed RNA polymerase subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 712 | 0.0e+00
|
| mgal | WP_011113454.1 DNA-directed RNA polymerase subunit beta [Mycoplasma gallisepticum] | 1634 | 0.0e+00
|
| uure | WP_004025875.1 DNA-directed RNA polymerase subunit beta [Ureaplasma urealyticum] | 1389 | 0.0e+00
|
| phyt | WP_011160634.1 DNA-directed RNA polymerase subunit beta [Onion yellows phytoplasma] | 660 | 0.0e+00
|
| bsub | NP_387988.2 RNA polymerase (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] | 884 | 0.0e+00
|
| cace | WP_010966421.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Clostridium] | 689 | 0.0e+00
|
| ecoli | NP_418414.1 RNA polymerase subunit beta [Escherichia coli str. K-12 substr. MG1655] | 513 | 2.2e-159
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RNA_pol_Rpb2_6 | 1 | RNA polymerase Rpb2, domain 6 | 818-1280 | 486.8 | 4.9e-146
|
| RNA_pol_Rpb2_3 | 1 | RNA polymerase Rpb2, domain 3 | 611-679 | 94.0 | 4.4e-27
|
| RNA_pol_Rpb2_7 | 1 | RNA polymerase Rpb2, domain 7 | 1282-1356 | 92.0 | 2.4e-26
|
| RNA_pol_Rpb2_45 | 1 | RNA polymerase beta subunit external 1 domain | 689-756 | 58.6 | 5.5e-16
|
| RNA_pol_Rpb2_1 | 1 | RNA polymerase beta subunit | 33-578 | 40.0 | 2.9e-10
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874872.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1391/1391 (100%) | 7388 | 0.0e+00
|
| ref|WP_038534447.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1390/1391 (99%) | 7386 | 0.0e+00
|
| ref|WP_014325577.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1390/1391 (99%) | 7385 | 0.0e+00
|
| ref|WP_053344146.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1389/1391 (99%) | 7384 | 0.0e+00
|
| ref|WP_086137887.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1389/1391 (99%) | 7382 | 0.0e+00
|
| ref|WP_159204516.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1390/1391 (99%) | 7380 | 0.0e+00
|
| ref|WP_053344062.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1389/1391 (99%) | 7375 | 0.0e+00
|
| ref|WP_054173790.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1389/1391 (99%) | 7374 | 0.0e+00
|
| ref|WP_054175001.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1390/1391 (99%) | 7373 | 0.0e+00
|
| ref|WP_159201638.1| DNA-directed RNA polymerase subunit beta [Mycoplasma pneumoniae] | 1388/1391 (99%) | 7371 | 0.0e+00
|
Maintained by Jun Ishikawa