General features
| Gene ID | MPN515
|
| Type | CDS
|
| From | 632282
|
| To | 628410
|
| Strand | -
|
| General name | rpoC
|
| Definition | DNA-directed RNA polymerase beta' chain
|
| nt length | 3873
|
| aa length | 1290
|
| m.w. | 144894.24
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE800 rpoC DNA-directed RNA polymerase subunit beta' 92365:96231 | 1588 | 0.0e+00
|
| mgen | WP_010869441.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma genitalium] | 2454 | 0.0e+00
|
| mpul | WP_010925346.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma pulmonis] | 788 | 0.0e+00
|
| mmob | WP_011264802.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma mobile] | 553 | 1.9e-175
|
| mmyc | NP_975974.1 DNA-directed RNA polymerase subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 1184 | 0.0e+00
|
| mgal | WP_011113455.1 DNA-directed RNA polymerase subunit beta' [Mycoplasma gallisepticum] | 1638 | 0.0e+00
|
| uure | WP_004026159.1 DNA-directed RNA polymerase subunit beta' [Ureaplasma urealyticum] | 1466 | 0.0e+00
|
| phyt | WP_011160635.1 DNA-directed RNA polymerase subunit beta' [Onion yellows phytoplasma] | 975 | 0.0e+00
|
| bsub | NP_387989.2 RNA polymerase (beta' subunit) [Bacillus subtilis subsp. subtilis str. 168] | 1122 | 0.0e+00
|
| cace | WP_010966420.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Clostridium] | 1043 | 0.0e+00
|
| ecoli | NP_418415.1 RNA polymerase subunit beta' [Escherichia coli str. K-12 substr. MG1655] | 766 | 0.0e+00
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RNA_pol_Rpb1_1 | 1 | RNA polymerase Rpb1, domain 1 | 13-403 | 315.7 | 3.3e-94
|
| RNA_pol_Rpb1_5 | 1 | RNA polymerase Rpb1, domain 5 | 861-1181 | 189.4 | 7.9e-56
|
| RNA_pol_Rpb1_2 | 1 | RNA polymerase Rpb1, domain 2 | 405-554 | 162.3 | 1.1e-47
|
| RNA_pol_Rpb1_3 | 1 | RNA polymerase Rpb1, domain 3 | 559-739 | 90.1 | 1.4e-25
|
| RNA_pol_Rpb1_4 | 1 | RNA polymerase Rpb1, domain 4 | 768-858 | 61.1 | 8.1e-17
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874871.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumoniae] | 1290/1290 (100%) | 6863 | 0.0e+00
|
| ref|WP_017532897.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumoniae] | 1289/1290 (99%) | 6858 | 0.0e+00
|
| ref|WP_084893015.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumoniae] | 1289/1290 (99%) | 6858 | 0.0e+00
|
| ref|WP_014325576.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumoniae] | 1288/1290 (99%) | 6855 | 0.0e+00
|
| ref|WP_014575016.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumoniae] | 1287/1290 (99%) | 6844 | 0.0e+00
|
| ref|WP_086131720.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumoniae] | 1286/1290 (99%) | 6842 | 0.0e+00
|
| ref|WP_014894042.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma genitalium] | 1192/1289 (92%) | 6368 | 0.0e+00
|
| ref|WP_014894481.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma genitalium] | 1191/1289 (92%) | 6362 | 0.0e+00
|
| ref|WP_010869441.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma genitalium] | 1191/1289 (92%) | 6361 | 0.0e+00
|
| ref|WP_014894302.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma genitalium] | 1190/1289 (92%) | 6358 | 0.0e+00
|
Maintained by Jun Ishikawa