General features
| Gene ID | MYPE5110
|
| Type | CDS
|
| From | 650595
|
| To | 651986
|
| Strand | +
|
| General name | pdhD
|
| Definition | dihydrolipoamide dehydrogenase of pyruvate dehydrogenase E3 component
|
| nt length | 1392
|
| aa length | 463
|
| m.w. | 50836.30
|
| COG | [C] Energy production and conversion
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN390 pdhD dihydrolipoamide dehydrogenase 467846:466473 | 405 | 2.4e-140
|
| mgen | WP_009885903.1 dihydrolipoyl dehydrogenase [Mycoplasma genitalium] | 403 | 1.6e-139
|
| mpul | WP_010925561.1 dihydrolipoyl dehydrogenase [Mycoplasma pulmonis] | 389 | 2.5e-131
|
| mmob | WP_011265100.1 dihydrolipoyl dehydrogenase [Mycoplasma mobile] | 354 | 2.4e-118
|
| mmyc | NP_975267.1 dihydrolipoamide dehydrogenase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 398 | 1.6e-135
|
| mgal | WP_011113731.1 dihydrolipoyl dehydrogenase [Mycoplasma gallisepticum] | 451 | 3.4e-158
|
| phyt | WP_011160952.1 MULTISPECIES: dihydrolipoyl dehydrogenase [Candidatus Phytoplasma asteris] | 343 | 3.4e-116
|
| bsub | NP_389344.1 dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [Bacillus subtilis subsp. subtilis str. 168] | 325 | 5.9e-108
|
| ecoli | NP_414658.1 lipoamide dehydrogenase [Escherichia coli str. K-12 substr. MG1655] | 249 | 2.4e-78
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; phyt, ; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Pyr_redox_2 | 1 | Pyridine nucleotide-disulphide oxidoreductase | 4-321 | 251.0 | 1.4e-74
|
| Pyr_redox_dim | 1 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | 340-447 | 115.1 | 1.8e-33
|
| Pyr_redox | 1 | Pyridine nucleotide-disulphide oxidoreductase | 177-243 | 69.1 | 3.7e-19
|
| Pyr_redox_3 | 1 | Pyridine nucleotide-disulphide oxidoreductase | 7-305 | 49.3 | 4.1e-13
|
| GIDA | 1 | Glucose inhibited division protein A | 5-152 | 32.0 | 7e-08
|
| FAD_binding_2 | 1 | FAD binding domain | 5-36 | 26.7 | 2.8e-06
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_129374562.1| dihydrolipoyl dehydrogenase [Mycoplasma penetrans] | 463/463 (100%) | 2450 | 0.0e+00
|
| ref|WP_004025407.1| dihydrolipoyl dehydrogenase [Mycoplasma iowae] | 293/462 (63%) | 1577 | 0.0e+00
|
| ref|WP_036451425.1| dihydrolipoyl dehydrogenase [Mycoplasma iowae] | 292/462 (63%) | 1575 | 0.0e+00
|
| ref|WP_129692558.1| dihydrolipoyl dehydrogenase [Mycoplasma iowae] | 292/462 (63%) | 1572 | 0.0e+00
|
| ref|WP_033159645.1| dihydrolipoyl dehydrogenase [Mycoplasma alvi] | 223/458 (48%) | 1178 | 2.1e-155
|
| ref|WP_081275302.1| dihydrolipoyl dehydrogenase [Mycoplasma gallisepticum] | 241/460 (52%) | 1174 | 9.9e-155
|
| ref|WP_014886379.1| dihydrolipoyl dehydrogenase [Mycoplasma gallisepticum] | 241/460 (52%) | 1173 | 1.4e-154
|
| ref|WP_023893698.1| dihydrolipoyl dehydrogenase [Mycoplasma gallisepticum] | 241/460 (52%) | 1172 | 1.9e-154
|
| ref|WP_014574542.1| dihydrolipoyl dehydrogenase [Mycoplasma gallisepticum] | 240/460 (52%) | 1171 | 2.9e-154
|
| ref|WP_151029871.1| dihydrolipoyl dehydrogenase [Mycoplasma gallisepticum] | 240/460 (52%) | 1170 | 4.0e-154
|
Maintained by Jun Ishikawa