General features
| Gene ID | MPN446
|
| Type | CDS
|
| From | 543281
|
| To | 542664
|
| Strand | -
|
| General name | rpsD
|
| Definition | ribosomal protein S4
|
| nt length | 618
|
| aa length | 205
|
| m.w. | 23774.42
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE7550 rpsD 30S ribosomal protein S4 992241:991633 | 238 | 7.4e-82
|
| mgen | WP_009885889.1 30S ribosomal protein S4 [Mycoplasma genitalium] | 379 | 7.5e-138
|
| mpul | WP_010925517.1 30S ribosomal protein S4 [Mycoplasma pulmonis] | 170 | 2.2e-55
|
| mmob | WP_011264589.1 30S ribosomal protein S4 [Mycoplasma mobile] | 203 | 1.9e-68
|
| mmyc | NP_975277.1 30S ribosomal protein S4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 218 | 5.0e-74
|
| mgal | WP_011113789.1 30S ribosomal protein S4 [Mycoplasma gallisepticum] | 259 | 1.4e-90
|
| uure | WP_004025550.1 30S ribosomal protein S4 [Ureaplasma urealyticum] | 229 | 1.9e-78
|
| bsub | NP_390844.1 ribosomal protein S4 (BS4) [Bacillus subtilis subsp. subtilis str. 168] | 167 | 8.0e-54
|
| cace | WP_010964787.1 MULTISPECIES: 30S ribosomal protein S4 [Clostridium] | 128 | 1.7e-38
|
| ecoli | NP_417755.1 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] | 141 | 2.4e-43
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S4 | 1 | Ribosomal protein S4/S9 N-terminal domain | 2-94 | 76.1 | 3e-21
|
| S4 | 1 | S4 domain | 96-142 | 62.6 | 2e-17
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874802.1| 30S ribosomal protein S4 [Mycoplasma pneumoniae] | 205/205 (100%) | 1079 | 1.3e-148
|
| ref|WP_009885889.1| 30S ribosomal protein S4 [Mycoplasma genitalium] | 180/205 (87%) | 972 | 2.5e-132
|
| ref|WP_014894279.1| 30S ribosomal protein S4 [Mycoplasma genitalium] | 179/205 (87%) | 969 | 8.4e-132
|
| ref|WP_027119385.1| 30S ribosomal protein S4 [Mycoplasma testudinis] | 146/204 (71%) | 781 | 3.2e-103
|
| ref|WP_033160277.1| 30S ribosomal protein S4 [Mycoplasma alvi] | 139/204 (68%) | 737 | 2.0e-96
|
| ref|WP_027123941.1| 30S ribosomal protein S4 [Mycoplasma pirum] | 136/204 (66%) | 726 | 7.5e-95
|
| ref|WP_027121841.1| 30S ribosomal protein S4 [Mycoplasma imitans] | 125/204 (61%) | 668 | 6.6e-86
|
| ref|WP_011113789.1| 30S ribosomal protein S4 [Mycoplasma gallisepticum] | 124/204 (60%) | 663 | 3.0e-85
|
| ref|WP_027333123.1| 30S ribosomal protein S4 [Mycoplasma gallisepticum] | 123/204 (60%) | 659 | 1.2e-84
|
| ref|WP_004024977.1| 30S ribosomal protein S4 [Mycoplasma iowae] | 123/203 (60%) | 635 | 5.5e-81
|
Maintained by Jun Ishikawa