General features
| Gene ID | MYPE4030
|
| Type | CDS
|
| From | 528762
|
| To | 528514
|
| Strand | -
|
| General name | rpL28
|
| Definition | ribosomal protein L28
|
| nt length | 249
|
| aa length | 82
|
| m.w. | 9463.96
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN624 rpmB ribosomal protein L28 751224:751421 | 54 | 1.5e-13
|
| mgen | WP_009885606.1 50S ribosomal protein L28 [Mycoplasma genitalium] | 58 | 5.7e-15
|
| mpul | WP_010925497.1 50S ribosomal protein L28 [Mycoplasma pulmonis] | 56 | 3.3e-14
|
| mmob | WP_011264935.1 50S ribosomal protein L28 [Mycoplasma mobile] | 63 | 4.6e-17
|
| mmyc | NP_975469.3 50S ribosomal protein L28 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 78 | 1.3e-22
|
| mgal | WP_011113782.1 50S ribosomal protein L28 [Mycoplasma gallisepticum] | 58 | 6.0e-15
|
| uure | WP_004027297.1 50S ribosomal protein L28 [Ureaplasma urealyticum] | 70 | 1.2e-19
|
| phyt | WP_011160481.1 MULTISPECIES: 50S ribosomal protein L28 [Candidatus Phytoplasma] | 58 | 2.1e-15
|
| bsub | NP_389464.1 ribosomal protein L28 [Bacillus subtilis subsp. subtilis str. 168] | 48 | 2.9e-10
|
| ecoli | NP_418094.1 50S ribosomal subunit protein L28 [Escherichia coli str. K-12 substr. MG1655] | 46 | 1.8e-09
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_L28 | 1 | Ribosomal L28 family | 3-60 | 58.1 | 7.1e-16
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077229.1| 50S ribosomal protein L28 [Mycoplasma penetrans] | 82/82 (100%) | 420 | 4.9e-52
|
| ref|WP_004025374.1| 50S ribosomal protein L28 [Mycoplasma iowae] | 44/69 (63%) | 231 | 2.7e-23
|
| ref|WP_036451309.1| 50S ribosomal protein L28 [Mycoplasma iowae] | 43/69 (62%) | 228 | 6.7e-23
|
| ref|WP_011183124.1| MULTISPECIES: 50S ribosomal protein L28 [Entomoplasmataceae] | 39/65 (60%) | 209 | 4.1e-20
|
| ref|WP_027875270.1| 50S ribosomal protein L28 [Mesoplasma chauliocola] | 39/65 (60%) | 208 | 6.6e-20
|
| ref|WP_024863710.1| 50S ribosomal protein L28 [Entomoplasma somnilux] | 38/65 (58%) | 202 | 4.0e-19
|
| ref|WP_027048505.1| 50S ribosomal protein L28 [Mesoplasma syrphidae] | 37/65 (56%) | 202 | 4.3e-19
|
| ref|WP_100254227.1| 50S ribosomal protein L28 [Spiroplasma clarkii] | 37/66 (56%) | 202 | 5.4e-19
|
| ref|WP_115558247.1| 50S ribosomal protein L28 [Spiroplasma alleghenense] | 38/65 (58%) | 201 | 6.3e-19
|
| ref|WP_027063072.1| 50S ribosomal protein L28 [Mesoplasma seiffertii] | 37/65 (56%) | 200 | 9.6e-19
|
Maintained by Jun Ishikawa