General features
| Gene ID | MPN379
|
| Type | CDS
|
| From | 456272
|
| To | 457147
|
| Strand | +
|
| General name | polA
|
| Definition | 5'-3' exonuclease
|
| nt length | 876
|
| aa length | 291
|
| m.w. | 32971.69
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1990 polI DNA polymerase I: 5'-3' exonuclease 252208:253086 | 219 | 4.1e-72
|
| mgen | WP_010869399.1 5'-3' exonuclease [Mycoplasma genitalium] | 422 | 3.9e-152
|
| mpul | WP_010925521.1 5'-3' exonuclease [Mycoplasma pulmonis] | 107 | 4.8e-29
|
| mmob | WP_011265008.1 5'-3' exonuclease [Mycoplasma mobile] | 152 | 6.2e-46
|
| mmyc | NP_975660.1 DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 164 | 2.4e-47
|
| mgal | WP_011113475.1 5'-3' exonuclease [Mycoplasma gallisepticum] | 208 | 6.9e-68
|
| uure | WP_004025688.1 5'-3' exonuclease [Ureaplasma urealyticum] | 227 | 2.7e-75
|
| phyt | WP_011161020.1 5'-3' exonuclease [Onion yellows phytoplasma] | 182 | 1.5e-57
|
| bsub | NP_390787.1 DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] | 166 | 2.3e-47
|
| cace | WP_010964413.1 MULTISPECIES: DNA polymerase I [Clostridium] | 182 | 5.3e-53
|
| ecoli | NP_418300.1 DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] | 125 | 3.5e-33
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| 5_3_exonuc_N | 1 | 5'-3' exonuclease, N-terminal resolvase-like domain | 4-172 | 142.3 | 1.2e-41
|
| 5_3_exonuc | 1 | 5'-3' exonuclease, C-terminal SAM fold | 176-269 | 82.7 | 2.1e-23
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874735.1| 5'-3' exonuclease [Mycoplasma pneumoniae] | 291/291 (100%) | 1541 | 0.0e+00
|
| ref|WP_014894010.1| 5'-3' exonuclease [Mycoplasma genitalium] | 199/291 (68%) | 1086 | 8.3e-147
|
| ref|WP_010869399.1| 5'-3' exonuclease [Mycoplasma genitalium] | 198/291 (68%) | 1084 | 1.3e-146
|
| ref|WP_036448755.1| 5'-3' exonuclease [Mycoplasma pirum] | 135/283 (47%) | 682 | 1.7e-85
|
| ref|WP_027123861.1| hypothetical protein [Mycoplasma pirum] | 135/283 (47%) | 682 | 1.9e-85
|
| ref|WP_033159715.1| 5'-3' exonuclease [Mycoplasma alvi] | 127/283 (44%) | 624 | 1.3e-76
|
| ref|WP_006688635.1| 5'-3' exonuclease [Ureaplasma parvum] | 121/276 (43%) | 590 | 1.1e-71
|
| ref|WP_004024656.1| 5'-3' exonuclease [Mycoplasma iowae] | 117/286 (40%) | 581 | 2.8e-70
|
| ref|WP_036452313.1| 5'-3' exonuclease [Mycoplasma iowae] | 117/286 (40%) | 580 | 3.6e-70
|
| ref|WP_004027431.1| 5'-3' exonuclease [Ureaplasma urealyticum] | 118/281 (41%) | 580 | 4.1e-70
|
Maintained by Jun Ishikawa