General features
| Gene ID | MYPE3530
|
| Type | CDS
|
| From | 455952
|
| To | 456392
|
| Strand | +
|
| General name | smpB
|
| Definition | tmRNA-binding small protein B
|
| nt length | 441
|
| aa length | 146
|
| m.w. | 17317.31
|
| COG | [O] Posttranslational modification, protein turnover, chaperones
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN074 hypothetical protein 88341:87898 | 113 | 1.1e-34
|
| mgen | WP_009885724.1 SsrA-binding protein [Mycoplasma genitalium] | 112 | 2.7e-34
|
| mpul | WP_010925156.1 SsrA-binding protein [Mycoplasma pulmonis] | 110 | 1.5e-33
|
| mmob | WP_011264784.1 SsrA-binding protein SmpB [Mycoplasma mobile] | 112 | 1.8e-34
|
| mmyc | NP_975827.1 SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 134 | 6.6e-43
|
| mgal | WP_011113692.1 SsrA-binding protein [Mycoplasma gallisepticum] | 135 | 2.1e-43
|
| uure | WP_004025890.1 SsrA-binding protein SmpB [Ureaplasma urealyticum] | 153 | 2.4e-50
|
| phyt | WP_034172232.1 MULTISPECIES: SsrA-binding protein SmpB [Candidatus Phytoplasma asteris] | 116 | 7.1e-36
|
| bsub | NP_391240.1 tmRNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] | 122 | 2.1e-37
|
| cace | WP_010964035.1 MULTISPECIES: SsrA-binding protein SmpB [Clostridium] | 123 | 8.6e-38
|
| ecoli | NP_417110.1 SsrA-binding protein [Escherichia coli str. K-12 substr. MG1655] | 115 | 8.7e-35
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| SmpB | 1 | SmpB protein | 5-145 | 180.0 | 2.2e-53
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077180.1| SsrA-binding protein [Mycoplasma penetrans] | 146/146 (100%) | 748 | 4.7e-100
|
| ref|WP_004025090.1| SsrA-binding protein SmpB [Mycoplasma iowae] | 91/144 (63%) | 471 | 5.7e-58
|
| ref|WP_036451491.1| SsrA-binding protein SmpB [Mycoplasma iowae] | 90/144 (62%) | 466 | 3.5e-57
|
| ref|WP_092354557.1| SsrA-binding protein SmpB [[Clostridium] cocleatum] | 78/145 (53%) | 398 | 8.4e-47
|
| ref|WP_081723950.1| SsrA-binding protein SmpB [Clostridiales bacterium VE202-18] | 78/145 (53%) | 398 | 8.6e-47
|
| ref|WP_087244999.1| MULTISPECIES: SsrA-binding protein SmpB [Massilimicrobiota] | 75/145 (51%) | 398 | 1.1e-46
|
| ref|WP_036224726.1| SsrA-binding protein SmpB [Mesoaciditoga lauensis] | 78/145 (53%) | 397 | 1.3e-46
|
| ref|WP_028042551.1| SsrA-binding protein SmpB [Candidatus Stoquefichus massiliensis] | 77/145 (53%) | 396 | 1.7e-46
|
| ref|WP_003535825.1| MULTISPECIES: SsrA-binding protein SmpB [Erysipelotrichaceae] | 78/145 (53%) | 395 | 2.7e-46
|
| ref|WP_024721087.1| SsrA-binding protein SmpB [Clostridiales bacterium VE202-01] | 77/145 (53%) | 395 | 2.8e-46
|
Maintained by Jun Ishikawa