General features
| Gene ID | MYPE30
|
| Type | CDS
|
| From | 3002
|
| To | 4951
|
| Strand | +
|
| General name | gyrB
|
| Definition | DNA gyrase subunit B
|
| nt length | 1950
|
| aa length | 649
|
| m.w. | 73451.40
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN003 gyrB DNA gyrase subunit B 2869:4821 | 891 | 0.0e+00
|
| mgen | WP_009885560.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma genitalium] | 896 | 0.0e+00
|
| mpul | WP_041364243.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pulmonis] | 746 | 0.0e+00
|
| mmob | WP_041362766.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma mobile] | 748 | 0.0e+00
|
| mmyc | NP_975017.1 DNA gyrase subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 664 | 0.0e+00
|
| mgal | WP_011113987.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma gallisepticum] | 868 | 0.0e+00
|
| uure | WP_004025678.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Ureaplasma urealyticum] | 928 | 0.0e+00
|
| phyt | WP_011160849.1 MULTISPECIES: type IIA DNA topoisomerase subunit B [Candidatus Phytoplasma asteris] | 640 | 0.0e+00
|
| bsub | NP_387887.1 DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168] | 716 | 0.0e+00
|
| cace | WP_010963335.1 MULTISPECIES: DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium] | 687 | 0.0e+00
|
| ecoli | YP_026241.1 DNA gyrase subunit B [Escherichia coli str. K-12 substr. MG1655] | 530 | 1.5e-180
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_gyraseB | 1 | DNA gyrase B | 227-406 | 192.5 | 4.1e-57
|
| DNA_gyraseB_C | 1 | DNA gyrase B subunit, carboxyl terminus | 578-638 | 107.7 | 2.4e-31
|
| HATPase_c | 1 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 36-181 | 77.1 | 1.4e-21
|
| Toprim | 1 | Toprim domain | 435-545 | 62.0 | 5e-17
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076829.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma penetrans] | 649/649 (100%) | 3420 | 0.0e+00
|
| ref|WP_004024802.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma iowae] | 536/633 (84%) | 2913 | 0.0e+00
|
| ref|WP_144240881.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma iowae] | 537/633 (84%) | 2912 | 0.0e+00
|
| ref|WP_038103490.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Ureaplasma diversum] | 448/642 (69%) | 2435 | 0.0e+00
|
| ref|WP_004025678.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Ureaplasma urealyticum] | 448/648 (69%) | 2399 | 0.0e+00
|
| ref|WP_006688798.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Ureaplasma parvum] | 447/648 (68%) | 2394 | 0.0e+00
|
| ref|WP_027119761.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma testudinis] | 436/648 (67%) | 2371 | 0.0e+00
|
| ref|WP_009885560.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma genitalium] | 424/649 (65%) | 2316 | 0.0e+00
|
| ref|WP_054173306.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pneumoniae] | 423/649 (65%) | 2302 | 0.0e+00
|
| ref|WP_010874360.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycoplasma pneumoniae] | 423/649 (65%) | 2302 | 0.0e+00
|
Maintained by Jun Ishikawa