General features
| Gene ID | MPN292
|
| Type | CDS
|
| From | 349804
|
| To | 348875
|
| Strand | -
|
| General name | yceC
|
| Definition | ribosomal large subunit pseudouridine synthase D-like protein
|
| nt length | 930
|
| aa length | 309
|
| m.w. | 35228.33
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1310 pseudouridine synthase 157719:156823 | 169 | 4.7e-52
|
| mgen | WP_009885746.1 RluA family pseudouridine synthase [Mycoplasma genitalium] | 353 | 2.1e-124
|
| mpul | WP_010925102.1 RluA family pseudouridine synthase [Mycoplasma pulmonis] | 187 | 3.2e-59
|
| mmob | WP_011264846.1 RluA family pseudouridine synthase [Mycoplasma mobile] | 156 | 1.6e-47
|
| mmyc | NP_975564.1 ribosomal large subunit pseudouridylate synthase D [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 186 | 1.2e-58
|
| mgal | WP_011113448.1 RluA family pseudouridine synthase [Mycoplasma gallisepticum] | 296 | 1.3e-101
|
| uure | WP_012560282.1 RluA family pseudouridine synthase [Ureaplasma urealyticum] | 221 | 1.4e-72
|
| phyt | WP_011160506.1 MULTISPECIES: RluA family pseudouridine synthase [Candidatus Phytoplasma asteris] | 164 | 1.4e-50
|
| bsub | NP_389429.3 pseudouridylate synthase [Bacillus subtilis subsp. subtilis str. 168] | 183 | 4.3e-57
|
| cace | WP_010965413.1 MULTISPECIES: RluA family pseudouridine synthase [Clostridium] | 191 | 3.8e-60
|
| ecoli | NP_415604.1 23S rRNA pseudouridine(955/2504/2580) synthase [Escherichia coli str. K-12 substr. MG1655] | 148 | 2.2e-43
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| PseudoU_synth_2 | 1 | RNA pseudouridylate synthase | 89-237 | 108.7 | 3e-31
|
| S4 | 1 | S4 domain | 11-57 | 45.4 | 4.9e-12
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874649.1| RluA family pseudouridine synthase [Mycoplasma pneumoniae] | 309/309 (100%) | 1649 | 0.0e+00
|
| ref|WP_014325446.1| RluA family pseudouridine synthase [Mycoplasma pneumoniae] | 308/309 (99%) | 1644 | 0.0e+00
|
| ref|WP_159203816.1| RluA family pseudouridine synthase [Mycoplasma pneumoniae] | 307/309 (99%) | 1640 | 0.0e+00
|
| ref|WP_054175828.1| RluA family pseudouridine synthase [Mycoplasma pneumoniae] | 307/309 (99%) | 1639 | 0.0e+00
|
| ref|WP_054175849.1| RluA family pseudouridine synthase [Mycoplasma pneumoniae] | 309/309 (100%) | 1637 | 0.0e+00
|
| ref|WP_159226083.1| RluA family pseudouridine synthase [Mycoplasma pneumoniae] | 307/309 (99%) | 1637 | 0.0e+00
|
| ref|WP_054175482.1| RluA family pseudouridine synthase [Mycoplasma pneumoniae] | 307/309 (99%) | 1632 | 0.0e+00
|
| ref|WP_009885746.1| RluA family pseudouridine synthase [Mycoplasma genitalium] | 185/309 (59%) | 906 | 7.0e-119
|
| ref|WP_151029700.1| RluA family pseudouridine synthase [Mycoplasma gallisepticum] | 143/298 (47%) | 759 | 1.4e-96
|
| ref|WP_011113448.1| RluA family pseudouridine synthase [Mycoplasma gallisepticum] | 143/298 (47%) | 757 | 2.9e-96
|
Maintained by Jun Ishikawa