General features
| Gene ID | MYPE2860
|
| Type | CDS
|
| From | 374053
|
| To | 375333
|
| Strand | +
|
| General name | hisS
|
| Definition | histidyl-tRNA synthetase
|
| nt length | 1281
|
| aa length | 426
|
| m.w. | 49904.64
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN045 hisS histidyl-tRNA synthetase 53077:54321 | 255 | 9.6e-83
|
| mgen | WP_009885699.1 histidine--tRNA ligase [Mycoplasma genitalium] | 283 | 9.2e-94
|
| mpul | WP_010925137.1 histidine--tRNA ligase [Mycoplasma pulmonis] | 261 | 5.0e-85
|
| mmob | WP_011264793.1 histidine--tRNA ligase [Mycoplasma mobile] | 245 | 1.3e-78
|
| mmyc | NP_975332.1 histidyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 288 | 2.0e-95
|
| mgal | WP_011113416.1 histidine--tRNA ligase [Mycoplasma gallisepticum] | 303 | 3.5e-101
|
| uure | WP_004025545.1 histidine--tRNA ligase [Ureaplasma urealyticum] | 357 | 1.8e-122
|
| phyt | WP_011160502.1 MULTISPECIES: histidine--tRNA ligase [Candidatus Phytoplasma asteris] | 253 | 6.1e-82
|
| bsub | NP_390634.1 histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] | 297 | 3.8e-98
|
| cace | WP_010966027.1 MULTISPECIES: histidine--tRNA ligase [Clostridium] | 110 | 1.9e-27
|
| ecoli | NP_417009.1 histidine--tRNA ligase [Escherichia coli str. K-12 substr. MG1655] | 263 | 6.3e-85
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| tRNA-synt_His | 1 | Histidyl-tRNA synthetase | 8-313 | 120.8 | 6.9e-35
|
| tRNA-synt_2b | 1 | tRNA synthetase class II core domain (G, H, P, S and T) | 66-321 | 55.1 | 8.8e-15
|
| HGTP_anticodon | 1 | Anticodon binding domain | 330-420 | 39.3 | 5.3e-10
|
| tRNA-synt_2 | 1 | tRNA synthetases class II (D, K and N) | 104-262 | 22.0 | 7.2e-05
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077114.1| histidine--tRNA ligase [Mycoplasma penetrans] | 426/426 (100%) | 2206 | 0.0e+00
|
| ref|WP_036452675.1| histidine--tRNA ligase [Mycoplasma iowae] | 242/419 (57%) | 1221 | 3.7e-163
|
| ref|WP_004024757.1| histidine--tRNA ligase [Mycoplasma iowae] | 241/419 (57%) | 1219 | 8.1e-163
|
| ref|WP_006688869.1| histidine--tRNA ligase [Ureaplasma parvum] | 192/410 (46%) | 917 | 3.5e-117
|
| ref|WP_004025545.1| histidine--tRNA ligase [Ureaplasma urealyticum] | 206/416 (49%) | 917 | 4.3e-117
|
| ref|WP_131613404.1| histidine--tRNA ligase [Mycoplasma todarodis] | 186/419 (44%) | 882 | 7.7e-112
|
| ref|WP_070444954.1| histidine--tRNA ligase [Granulicatella sp. HMSC31F03] | 178/413 (43%) | 882 | 1.2e-111
|
| ref|WP_070437864.1| histidine--tRNA ligase [Granulicatella sp. HMSC30F09] | 178/413 (43%) | 882 | 1.3e-111
|
| ref|WP_049554617.1| MULTISPECIES: histidine--tRNA ligase [unclassified Granulicatella] | 179/413 (43%) | 881 | 1.6e-111
|
| ref|WP_048781901.1| histidine--tRNA ligase [Streptococcus sp. 263_SSPC] | 178/413 (43%) | 876 | 8.6e-111
|
Maintained by Jun Ishikawa