General features
| Gene ID | MPN280
|
| Type | CDS
|
| From | 331360
|
| To | 333069
|
| Strand | +
|
| General name |
|
| Definition | single stranded RNA(DNA) processing enzyme-like protein
|
| nt length | 1710
|
| aa length | 569
|
| m.w. | 64085.54
|
| COG | [R] General function prediction only
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE5290 conserved hypothetical protein 671800:673689 | 551 | 0.0e+00
|
| mgen | WP_009885694.1 ribonuclease J [Mycoplasma genitalium] | 1040 | 0.0e+00
|
| mpul | WP_010925505.1 ribonuclease J [Mycoplasma pulmonis] | 362 | 1.1e-119
|
| mmob | WP_011265138.1 ribonuclease J [Mycoplasma mobile] | 407 | 3.1e-137
|
| mmyc | NP_975648.1 hypothetical protein MSC_0670 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 481 | 4.1e-166
|
| mgal | WP_011113249.1 ribonuclease J [Mycoplasma gallisepticum] | 721 | 0.0e+00
|
| uure | WP_004025795.1 ribonuclease J [Ureaplasma urealyticum] | 547 | 0.0e+00
|
| phyt | WP_011160982.1 MULTISPECIES: ribonuclease J [Candidatus Phytoplasma asteris] | 397 | 4.9e-134
|
| bsub | NP_389336.1 ribonuclease J1 [Bacillus subtilis subsp. subtilis str. 168] | 427 | 4.6e-145
|
| cace | WP_010964990.1 MULTISPECIES: ribonuclease J [Clostridium] | 351 | 1.8e-115
|
| ecoli | NP_415040.1 glyoxylate carboligase [Escherichia coli str. K-12 substr. MG1655] | 33 | 5.1e-02
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Lactamase_B | 1 | Metallo-beta-lactamase superfamily | 28-175 | 58.5 | 9.1e-16
|
| RMMBL | 1 | Zn-dependent metallo-hydrolase RNA specificity domain | 372-418 | 41.9 | 6.8e-11
|
| Lactamase_B_2 | 1 | Beta-lactamase superfamily domain | 65-174 | 31.8 | 9.5e-08
|
| RNase_J_C | 1 | Ribonuclease J C-terminal domain | 493-566 | 29.3 | 1.3e-06
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874637.1| ribonuclease J [Mycoplasma pneumoniae] | 569/569 (100%) | 3027 | 0.0e+00
|
| ref|WP_159201763.1| RNase J family beta-CASP ribonuclease [Mycoplasma pneumoniae] | 568/569 (99%) | 3021 | 0.0e+00
|
| ref|WP_159203634.1| RNase J family beta-CASP ribonuclease, partial [Mycoplasma pneumoniae] | 542/542 (100%) | 2878 | 0.0e+00
|
| ref|WP_009885694.1| ribonuclease J [Mycoplasma genitalium] | 502/569 (88%) | 2688 | 0.0e+00
|
| ref|WP_014894583.1| ribonuclease J [Mycoplasma genitalium] | 501/569 (88%) | 2683 | 0.0e+00
|
| ref|WP_027119451.1| ribonuclease J [Mycoplasma testudinis] | 343/558 (61%) | 1933 | 0.0e+00
|
| ref|WP_027123796.1| ribonuclease J [Mycoplasma pirum] | 348/569 (61%) | 1919 | 0.0e+00
|
| ref|WP_033160024.1| ribonuclease J [Mycoplasma alvi] | 343/566 (60%) | 1909 | 0.0e+00
|
| ref|WP_027122289.1| ribonuclease J [Mycoplasma imitans] | 348/562 (61%) | 1874 | 0.0e+00
|
| ref|WP_011883635.1| ribonuclease J [Mycoplasma gallisepticum] | 348/562 (61%) | 1868 | 0.0e+00
|
Maintained by Jun Ishikawa