General features
| Gene ID | MPN277
|
| Type | CDS
|
| From | 326856
|
| To | 328325
|
| Strand | +
|
| General name | lysS
|
| Definition | lysyl-tRNA synthetase
|
| nt length | 1470
|
| aa length | 489
|
| m.w. | 56081.00
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE8420 lysS lysyl-tRNA synthetase 1124451:1122982 | 524 | 0.0e+00
|
| mgen | WP_009885692.1 lysine--tRNA ligase [Mycoplasma genitalium] | 771 | 0.0e+00
|
| mpul | WP_041364058.1 lysine--tRNA ligase [Mycoplasma pulmonis] | 455 | 5.9e-159
|
| mmob | WP_011264564.1 lysine--tRNA ligase [Mycoplasma mobile] | 422 | 3.0e-146
|
| mmyc | NP_975080.1 lysyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 428 | 3.7e-148
|
| mgal | WP_011113304.1 lysine--tRNA ligase [Mycoplasma gallisepticum] | 583 | 0.0e+00
|
| uure | WP_004025894.1 lysine--tRNA ligase [Ureaplasma urealyticum] | 507 | 4.1e-179
|
| phyt | WP_011160938.1 lysine--tRNA ligase [Onion yellows phytoplasma] | 423 | 4.5e-146
|
| bsub | NP_387963.1 lysyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] | 451 | 2.0e-156
|
| cace | WP_010966473.1 MULTISPECIES: lysine--tRNA ligase [Clostridium] | 451 | 1.8e-156
|
| ecoli | NP_417366.1 lysine--tRNA ligase, constitutive [Escherichia coli str. K-12 substr. MG1655] | 384 | 4.8e-130
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| tRNA-synt_2 | 1 | tRNA synthetases class II (D, K and N) | 149-485 | 264.2 | 1.4e-78
|
| tRNA-synt_2d | 1 | tRNA synthetases class II core domain (F) | 239-287 | 35.2 | 9e-09
|
| tRNA_anti-codon | 1 | OB-fold nucleic acid binding domain | 58-130 | 32.5 | 6.1e-08
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874634.1| lysine--tRNA ligase [Mycoplasma pneumoniae] | 489/489 (100%) | 2632 | 0.0e+00
|
| ref|WP_019830444.1| lysine--tRNA ligase [Mycoplasma pneumoniae] | 488/489 (99%) | 2627 | 0.0e+00
|
| ref|WP_014325434.1| lysine--tRNA ligase [Mycoplasma pneumoniae] | 488/489 (99%) | 2626 | 0.0e+00
|
| ref|WP_054173808.1| lysine--tRNA ligase [Mycoplasma pneumoniae] | 488/489 (99%) | 2625 | 0.0e+00
|
| ref|WP_009885692.1| lysine--tRNA ligase [Mycoplasma genitalium] | 363/489 (74%) | 1990 | 0.0e+00
|
| ref|WP_014894166.1| lysine--tRNA ligase [Mycoplasma genitalium] | 361/489 (73%) | 1985 | 0.0e+00
|
| ref|WP_014893955.1| lysine--tRNA ligase [Mycoplasma genitalium] | 362/489 (74%) | 1982 | 0.0e+00
|
| ref|WP_036499063.1| lysine--tRNA ligase [Mycoplasma testudinis] | 285/486 (58%) | 1566 | 0.0e+00
|
| ref|WP_027123896.1| lysine--tRNA ligase [Mycoplasma pirum] | 279/489 (57%) | 1534 | 0.0e+00
|
| ref|WP_033160088.1| lysine--tRNA ligase [Mycoplasma alvi] | 276/489 (56%) | 1518 | 0.0e+00
|
Maintained by Jun Ishikawa