General features
| Gene ID | MPN261
|
| Type | CDS
|
| From | 312256
|
| To | 314391
|
| Strand | +
|
| General name | topA
|
| Definition | DNA topoisomerase I
|
| nt length | 2136
|
| aa length | 711
|
| m.w. | 81964.70
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE4140 topA DNA topoisomerase I 545803:547926 | 640 | 0.0e+00
|
| mgen | WP_009885678.1 type I DNA topoisomerase [Mycoplasma genitalium] | 1041 | 0.0e+00
|
| mpul | WP_041364416.1 type I DNA topoisomerase [Mycoplasma pulmonis] | 327 | 1.4e-104
|
| mmob | WP_011264602.1 type I DNA topoisomerase [Mycoplasma mobile] | 335 | 1.1e-107
|
| mmyc | NP_975898.1 DNA topoisomerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 265 | 9.4e-81
|
| mgal | WP_011113893.1 type I DNA topoisomerase [Mycoplasma gallisepticum] | 647 | 0.0e+00
|
| uure | WP_012560269.1 type I DNA topoisomerase [Ureaplasma urealyticum] | 495 | 9.4e-169
|
| phyt | WP_011160653.1 type I DNA topoisomerase [Onion yellows phytoplasma] | 365 | 4.6e-119
|
| bsub | NP_389494.1 DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. 168] | 398 | 5.1e-130
|
| cace | WP_010965091.1 MULTISPECIES: type I DNA topoisomerase [Clostridium] | 418 | 7.8e-138
|
| ecoli | NP_415790.1 DNA topoisomerase 1 [Escherichia coli str. K-12 substr. MG1655] | 334 | 5.7e-104
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Topoisom_bac | 1 | DNA topoisomerase | 148-592 | 362.8 | 2.4e-108
|
| zf-C4_Topoisom | 2 | Topoisomerase DNA binding C4 zinc finger | 621-660, 671-710 | 100.4 | 3.3e-29
|
| Toprim | 1 | Toprim domain | 5-134 | 97.5 | 4.5e-28
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874618.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 711/711 (100%) | 3814 | 0.0e+00
|
| ref|WP_017532806.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 710/711 (99%) | 3813 | 0.0e+00
|
| ref|WP_086131704.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 710/711 (99%) | 3810 | 0.0e+00
|
| ref|WP_159201618.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 709/711 (99%) | 3809 | 0.0e+00
|
| ref|WP_161609208.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 710/711 (99%) | 3808 | 0.0e+00
|
| ref|WP_014325425.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 709/711 (99%) | 3808 | 0.0e+00
|
| ref|WP_014574925.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 709/711 (99%) | 3808 | 0.0e+00
|
| ref|WP_086118754.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 710/711 (99%) | 3807 | 0.0e+00
|
| ref|WP_053344037.1| type I DNA topoisomerase [Mycoplasma pneumoniae] | 710/711 (99%) | 3806 | 0.0e+00
|
| ref|WP_009885678.1| type I DNA topoisomerase [Mycoplasma genitalium] | 507/711 (71%) | 2692 | 0.0e+00
|
Maintained by Jun Ishikawa