General features
| Gene ID | MPN260
|
| Type | CDS
|
| From | 311284
|
| To | 312219
|
| Strand | +
|
| General name | rbsC
|
| Definition | sugar (ribose/galactose) ABC transporter permease subunit
|
| nt length | 936
|
| aa length | 311
|
| m.w. | 33492.17
|
| COG | [R] General function prediction only
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE5870 ABC transporter permease 741504:740575 | 255 | 2.0e-85
|
| mgen | WP_009885677.1 ABC transporter permease [Mycoplasma genitalium] | 405 | 9.3e-145
|
| mpul | WP_010925418.1 ABC transporter permease [Mycoplasma pulmonis] | 152 | 9.6e-46
|
| mmob | WP_011264559.1 ABC transporter permease [Mycoplasma mobile] | 136 | 1.2e-39
|
| mmyc | NP_975019.1 ribose/galactose ABC transporter permease [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 132 | 1.3e-37
|
| mgal | WP_011113844.1 ABC transporter permease [Mycoplasma gallisepticum] | 261 | 7.7e-88
|
| uure | WP_004025845.1 ABC transporter permease [Ureaplasma urealyticum] | 161 | 4.5e-49
|
| bsub | NP_391035.1 permease of ABC guanosine transporter [Bacillus subtilis subsp. subtilis str. 168] | 98 | 1.4e-24
|
| cace | WP_010964024.1 MULTISPECIES: ABC transporter permease [Clostridium] | 117 | 7.0e-32
|
| ecoli | NP_416653.1 D-galactose/methyl-galactoside ABC transporter membrane subunit [Escherichia coli str. K-12 substr. MG1655] | 30 | 2.1e-01
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| BPD_transp_2 | 1 | Branched-chain amino acid transport system / permease component | 10-285 | 153.3 | 7.1e-45
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874617.1| ABC transporter permease [Mycoplasma pneumoniae] | 311/311 (100%) | 1581 | 0.0e+00
|
| ref|WP_054173807.1| ABC transporter permease [Mycoplasma pneumoniae] | 310/311 (99%) | 1576 | 0.0e+00
|
| ref|WP_159203806.1| ABC transporter permease [Mycoplasma pneumoniae] | 310/311 (99%) | 1575 | 0.0e+00
|
| ref|WP_017532947.1| ABC transporter permease [Mycoplasma pneumoniae] | 309/311 (99%) | 1574 | 0.0e+00
|
| ref|WP_009885677.1| ABC transporter permease [Mycoplasma genitalium] | 210/307 (68%) | 1040 | 3.1e-139
|
| ref|WP_014894156.1| ABC transporter permease [Mycoplasma genitalium] | 209/307 (68%) | 1036 | 1.3e-138
|
| ref|WP_014893944.1| ABC transporter permease [Mycoplasma genitalium] | 209/307 (68%) | 1033 | 2.9e-138
|
| ref|WP_033160080.1| ABC transporter permease [Mycoplasma alvi] | 147/301 (48%) | 698 | 2.1e-87
|
| ref|WP_027121798.1| ABC transporter permease [Mycoplasma imitans] | 149/307 (48%) | 695 | 5.9e-87
|
| ref|WP_014574479.1| ABC transporter permease [Mycoplasma gallisepticum] | 148/307 (48%) | 681 | 7.9e-85
|
Maintained by Jun Ishikawa