General features
| Gene ID | MYPE230
|
| Type | CDS
|
| From | 34086
|
| To | 34802
|
| Strand | +
|
| General name | spoU
|
| Definition | rRNA methylase
|
| nt length | 717
|
| aa length | 238
|
| m.w. | 27243.40
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN355 yacO tRNA/rRNA methyltransferase-like protein 424238:423510 | 147 | 1.9e-45
|
| mgen | WP_010869393.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma genitalium] | 148 | 5.3e-46
|
| mpul | WP_010924982.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma pulmonis] | 126 | 2.3e-37
|
| mmob | WP_011264667.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma mobile] | 92 | 2.4e-24
|
| mmyc | NP_975927.1 rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 126 | 3.9e-37
|
| mgal | WP_011113939.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma gallisepticum] | 139 | 3.4e-42
|
| uure | WP_004025602.1 MULTISPECIES: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Ureaplasma] | 155 | 1.6e-48
|
| phyt | WP_101674489.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Onion yellows phytoplasma] | 103 | 1.3e-28
|
| bsub | NP_387977.1 23S rRNA (Gm2251)-methyltransferase [Bacillus subtilis subsp. subtilis str. 168] | 107 | 3.4e-29
|
| cace | WP_010966431.1 MULTISPECIES: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Clostridium] | 129 | 1.1e-37
|
| ecoli | NP_418601.1 23S rRNA 2'-O-ribose G2251 methyltransferase [Escherichia coli str. K-12 substr. MG1655] | 109 | 4.8e-30
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| SpoU_methylase | 1 | SpoU rRNA Methylase family | 90-232 | 128.4 | 2.2e-37
|
| SpoU_sub_bind | 1 | RNA 2'-O ribose methyltransferase substrate binding | 5-66 | 25.7 | 1e-05
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011076849.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma pen... | 238/238 (100%) | 1203 | 1.7e-166
|
| ref|WP_051790188.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma iow... | 121/234 (51%) | 527 | 1.5e-63
|
| ref|WP_004024721.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma iow... | 121/234 (51%) | 526 | 1.8e-63
|
| ref|WP_081794282.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Mycoplasma pir... | 98/232 (42%) | 393 | 2.5e-43
|
| ref|WP_004025602.1| MULTISPECIES: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [... | 106/231 (45%) | 391 | 3.8e-43
|
| ref|WP_006689126.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Ureaplasma par... | 106/231 (45%) | 390 | 5.4e-43
|
| ref|WP_038102136.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Ureaplasma div... | 95/231 (41%) | 385 | 3.3e-42
|
| ref|WP_004026334.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Ureaplasma ure... | 103/231 (44%) | 382 | 9.3e-42
|
| ref|WP_006688840.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Ureaplasma par... | 105/231 (45%) | 382 | 1.0e-41
|
| ref|WP_016829245.1| 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Ureaplasma ure... | 102/231 (44%) | 381 | 1.4e-41
|
Maintained by Jun Ishikawa