General features
| Gene ID | MPN230
|
| Type | CDS
|
| From | 280920
|
| To | 281234
|
| Strand | +
|
| General name | rpsR
|
| Definition | ribosomal protein S18
|
| nt length | 315
|
| aa length | 104
|
| m.w. | 12386.36
|
| COG | [-] not in COGs
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1160 rpsR ribosomal protein S18 142944:143408 | 74 | 6.6e-20
|
| mgen | WP_009885648.1 30S ribosomal protein S18 [Mycoplasma genitalium] | 156 | 5.7e-53
|
| mpul | WP_010925410.1 30S ribosomal protein S18 [Mycoplasma pulmonis] | 46 | 1.6e-09
|
| mmob | WP_041363074.1 30S ribosomal protein S18 [Mycoplasma mobile] | 53 | 1.2e-12
|
| mmyc | NP_975036.1 30S ribosomal protein S18 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 57 | 4.9e-14
|
| mgal | WP_011113872.1 30S ribosomal protein S18 [Mycoplasma gallisepticum] | 84 | 1.8e-24
|
| uure | WP_004025615.1 30S ribosomal protein S18 [Ureaplasma urealyticum] | 55 | 1.9e-13
|
| phyt | WP_011160386.1 MULTISPECIES: 30S ribosomal protein S18 [Candidatus Phytoplasma] | 56 | 5.5e-14
|
| bsub | NP_391969.2 ribosomal protein S18 [Bacillus subtilis subsp. subtilis str. 168] | 55 | 1.6e-12
|
| cace | WP_010966982.1 MULTISPECIES: 30S ribosomal protein S18 [Clostridium] | 60 | 9.9e-15
|
| ecoli | NP_418623.1 30S ribosomal subunit protein S18 [Escherichia coli str. K-12 substr. MG1655] | 63 | 1.3e-15
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S18 | 1 | Ribosomal protein S18 | 56-98 | 61.1 | 8.6e-17
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874587.1| 30S ribosomal protein S18 [Mycoplasma pneumoniae] | 104/104 (100%) | 556 | 4.2e-72
|
| ref|WP_009885648.1| 30S ribosomal protein S18 [Mycoplasma genitalium] | 75/104 (72%) | 394 | 1.9e-47
|
| ref|WP_014893928.1| 30S ribosomal protein S18 [Mycoplasma genitalium] | 74/104 (71%) | 386 | 3.1e-46
|
| ref|WP_027119909.1| 30S ribosomal protein S18 [Mycoplasma testudinis] | 41/69 (59%) | 211 | 3.2e-19
|
| ref|WP_011113872.1| 30S ribosomal protein S18 [Mycoplasma gallisepticum] | 47/102 (46%) | 208 | 3.9e-19
|
| ref|WP_027121781.1| 30S ribosomal protein S18 [Mycoplasma imitans] | 44/102 (43%) | 205 | 1.2e-18
|
| ref|WP_033160092.1| 30S ribosomal protein S18 [Mycoplasma alvi] | 45/97 (46%) | 206 | 1.8e-18
|
| ref|WP_140944588.1| 30S ribosomal protein S18 [Candidatus Thermokryptus mobilis] | 40/81 (49%) | 201 | 2.6e-18
|
| ref|WP_055189171.1| 30S ribosomal protein S18 [Faecalibacterium prausnitzii] | 42/84 (50%) | 199 | 4.6e-18
|
| ref|WP_047133572.1| 30S ribosomal protein S18 [Candidatus Kryptonium thompsoni] | 37/69 (53%) | 199 | 4.7e-18
|
Maintained by Jun Ishikawa