General features
| Gene ID | MPN229
|
| Type | CDS
|
| From | 280430
|
| To | 280930
|
| Strand | +
|
| General name | ssb
|
| Definition | single-stranded DNA binding protein
|
| nt length | 501
|
| aa length | 166
|
| m.w. | 18424.05
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1150 ssb single-strand DNA binding protein 142348:142917 | 43 | 4.4e-07
|
| mgen | WP_010869327.1 single-stranded DNA-binding protein [Mycoplasma genitalium] | 202 | 1.9e-69
|
| mpul | WP_010925411.1 single-stranded DNA-binding protein [Mycoplasma pulmonis] | 38 | 1.3e-05
|
| mmyc | NP_975419.1 hypothetical protein MSC_0433 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 26 | 1.2e-01
|
| uure | WP_004025516.1 single-stranded DNA-binding protein [Ureaplasma urealyticum] | 57 | 1.3e-12
|
| phyt | WP_011160913.1 single-stranded DNA-binding protein [Onion yellows phytoplasma] | 30 | 3.0e-03
|
| bsub | NP_391970.1 single-strand DNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] | 36 | 3.8e-04
|
| cace | WP_010965678.1 MULTISPECIES: single-stranded DNA-binding protein [Clostridium] | 43 | 1.5e-06
|
| ecoli | NP_418483.1 ssDNA-binding protein [Escherichia coli str. K-12 substr. MG1655] | 34 | 1.5e-03
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmyc, Mycoplasma mycoides; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| SSB | 1 | Single-strand binding protein family | 1-100 | 75.7 | 2.4e-21
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874586.1| single-stranded DNA-binding protein [Mycoplasma pneumoniae] | 166/166 (100%) | 864 | 3.9e-117
|
| ref|WP_010869327.1| single-stranded DNA-binding protein [Mycoplasma genitalium] | 96/165 (58%) | 514 | 6.4e-64
|
| ref|WP_127008332.1| single-stranded DNA-binding protein [Veillonella seminalis] | 45/120 (37%) | 156 | 2.8e-10
|
| ref|WP_033160091.1| single-stranded DNA-binding protein [Mycoplasma alvi] | 39/102 (38%) | 153 | 2.0e-09
|
| ref|WP_051675857.1| single-stranded DNA-binding protein [Ureaplasma canigenitalium] | 37/102 (36%) | 150 | 3.6e-09
|
| ref|WP_027119910.1| single-stranded DNA-binding protein [Mycoplasma testudinis] | 33/76 (43%) | 144 | 5.1e-08
|
| ref|WP_013782039.1| single-stranded DNA-binding protein [Mahella australiensis] | 39/115 (33%) | 138 | 1.7e-07
|
| ref|WP_014452869.1| single-stranded DNA-binding protein [Caldisericum exile] | 41/116 (35%) | 137 | 1.8e-07
|
| ref|WP_006688666.1| single-stranded DNA-binding protein [Ureaplasma parvum] | 35/99 (35%) | 139 | 2.0e-07
|
| ref|WP_105097771.1| single-stranded DNA-binding protein [Veillonella sp. S13053-19] | 36/99 (36%) | 136 | 2.0e-07
|
Maintained by Jun Ishikawa