General features
| Gene ID | MPN228
|
| Type | CDS
|
| From | 279783
|
| To | 280430
|
| Strand | +
|
| General name | rpsF
|
| Definition | ribosomal protein S6
|
| nt length | 648
|
| aa length | 215
|
| m.w. | 25391.36
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE1140 rpsF ribosomal protein S6 141878:142315 | 88 | 8.1e-24
|
| mgen | WP_009885647.1 30S ribosomal protein S6 [Mycoplasma genitalium] | 276 | 3.4e-97
|
| mpul | WP_010925412.1 30S ribosomal protein S6 [Mycoplasma pulmonis] | 37 | 4.4e-05
|
| mmob | WP_011264747.1 30S ribosomal protein S6 [Mycoplasma mobile] | 43 | 2.2e-07
|
| mmyc | NP_975038.1 30S ribosomal protein S6 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 38 | 1.2e-05
|
| mgal | WP_011113874.1 30S ribosomal protein S6 [Mycoplasma gallisepticum] | 103 | 2.1e-29
|
| uure | WP_004025588.1 30S ribosomal protein S6 [Ureaplasma urealyticum] | 86 | 3.8e-23
|
| phyt | WP_034172155.1 MULTISPECIES: 30S ribosomal protein S6 [Candidatus Phytoplasma] | 35 | 5.5e-05
|
| bsub | NP_391127.1 xanthine dehydrogenase, iron-sulfur subunit [Bacillus subtilis subsp. subtilis str. 168] | 27 | 4.3e-01
|
| cace | WP_010966984.1 MULTISPECIES: 30S ribosomal protein S6 [Clostridium] | 40 | 6.8e-06
|
| ecoli | NP_418621.5 30S ribosomal subunit protein S6 [Escherichia coli str. K-12 substr. MG1655] | 39 | 3.8e-05
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S6 | 1 | Ribosomal protein S6 | 2-88 | 54.4 | 1.1e-14
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874585.1| 30S ribosomal protein S6 [Mycoplasma pneumoniae] | 215/215 (100%) | 1128 | 9.1e-156
|
| ref|WP_161609416.1| 30S ribosomal protein S6 [Mycoplasma pneumoniae] | 214/215 (99%) | 1121 | 1.1e-154
|
| ref|WP_159203673.1| 30S ribosomal protein S6, partial [Mycoplasma pneumoniae] | 172/172 (100%) | 900 | 1.1e-121
|
| ref|WP_009885647.1| 30S ribosomal protein S6 [Mycoplasma genitalium] | 135/200 (67%) | 707 | 1.1e-91
|
| ref|WP_052663505.1| 30S ribosomal protein S6 [Mycoplasma testudinis] | 69/164 (42%) | 314 | 1.5e-32
|
| ref|WP_011883379.1| 30S ribosomal protein S6 [Mycoplasma gallisepticum] | 65/163 (39%) | 260 | 2.2e-24
|
| ref|WP_014886387.1| 30S ribosomal protein S6 [Mycoplasma gallisepticum] | 65/163 (39%) | 258 | 3.8e-24
|
| ref|WP_011113874.1| 30S ribosomal protein S6 [Mycoplasma gallisepticum] | 65/163 (39%) | 258 | 4.5e-24
|
| ref|WP_052663055.1| 30S ribosomal protein S6 [Mycoplasma pirum] | 61/179 (34%) | 254 | 5.4e-22
|
| ref|WP_027121779.1| 30S ribosomal protein S6 [Mycoplasma imitans] | 51/118 (43%) | 243 | 7.7e-22
|
Maintained by Jun Ishikawa