General features
| Gene ID | MPN216
|
| Type | CDS
|
| From | 267072
|
| To | 268202
|
| Strand | +
|
| General name | amiD
|
| Definition | oligopeptide transport system permease protein AmiD
|
| nt length | 1131
|
| aa length | 376
|
| m.w. | 41233.25
|
| COG | [EP]
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE8770 oppC oligopeptide ABC transporter permease protein 1182073:1180895 | 300 | 3.3e-101
|
| mgen | WP_009885933.1 ABC transporter permease [Mycoplasma genitalium] | 652 | 0.0e+00
|
| mpul | WP_010925088.1 ABC transporter permease [Mycoplasma pulmonis] | 143 | 6.9e-41
|
| mmob | WP_011264970.1 ABC transporter permease [Mycoplasma mobile] | 135 | 4.5e-38
|
| mmyc | NP_975933.1 oligopeptide ABC transporter permease [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 82 | 3.2e-19
|
| mgal | WP_011113764.1 ABC transporter permease [Mycoplasma gallisepticum] | 263 | 5.0e-87
|
| uure | WP_004027173.1 ABC transporter permease [Ureaplasma urealyticum] | 73 | 4.5e-16
|
| phyt | WP_011160398.1 ABC transporter permease [Onion yellows phytoplasma] | 85 | 2.0e-20
|
| bsub | NP_389027.1 oligopeptide ABC transporter (permease) [Bacillus subtilis subsp. subtilis str. 168] | 90 | 1.3e-21
|
| cace | WP_010966893.1 MULTISPECIES: ABC transporter permease [Clostridium] | 101 | 1.9e-25
|
| ecoli | NP_415353.1 glutathione ABC transporter membrane subunit GsiD [Escherichia coli str. K-12 substr. MG1655] | 67 | 2.4e-13
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| BPD_transp_1 | 1 | Binding-protein-dependent transport system inner membrane component | 187-374 | 72.5 | 3.5e-20
|
| OppC_N | 1 | N-terminal TM domain of oligopeptide transport permease C | 36-87 | 31.6 | 1.2e-07
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874573.1| ABC transporter permease [Mycoplasma pneumoniae] | 376/376 (100%) | 1928 | 0.0e+00
|
| ref|WP_054173844.1| ABC transporter permease [Mycoplasma pneumoniae] | 375/376 (99%) | 1924 | 0.0e+00
|
| ref|WP_096489787.1| ABC transporter permease [Mycoplasma pneumoniae] | 375/376 (99%) | 1924 | 0.0e+00
|
| ref|WP_009885933.1| ABC transporter permease [Mycoplasma genitalium] | 317/376 (84%) | 1682 | 0.0e+00
|
| ref|WP_014894141.1| ABC transporter permease [Mycoplasma genitalium] | 316/376 (84%) | 1680 | 0.0e+00
|
| ref|WP_014894564.1| ABC transporter permease [Mycoplasma genitalium] | 316/376 (84%) | 1679 | 0.0e+00
|
| ref|WP_014894384.1| ABC transporter permease [Mycoplasma genitalium] | 316/376 (84%) | 1678 | 0.0e+00
|
| ref|WP_052663114.1| ABC transporter permease [Mycoplasma pirum] | 179/374 (47%) | 812 | 1.5e-102
|
| ref|WP_052664045.1| ABC transporter permease [Mycoplasma alvi] | 175/373 (46%) | 811 | 1.7e-102
|
| ref|WP_129374420.1| ABC transporter permease [Mycoplasma penetrans] | 176/365 (48%) | 769 | 4.8e-96
|
Maintained by Jun Ishikawa