General features
| Gene ID | MYPE2000
|
| Type | CDS
|
| From | 253088
|
| To | 253921
|
| Strand | +
|
| General name | fpg
|
| Definition | formamidopyrimidine-DNA glycosylase
|
| nt length | 834
|
| aa length | 277
|
| m.w. | 32479.21
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN380 fpg formamidopyrimidine-DNA glycosylase 457147:457980 | 268 | 6.7e-92
|
| mgen | WP_010869400.1 DNA-formamidopyrimidine glycosylase [Mycoplasma genitalium] | 257 | 2.1e-87
|
| mpul | WP_010925114.1 DNA-formamidopyrimidine glycosylase [Mycoplasma pulmonis] | 211 | 2.0e-69
|
| mmob | WP_011264892.1 DNA-formamidopyrimidine glycosylase [Mycoplasma mobile] | 206 | 1.5e-67
|
| mmyc | NP_975659.1 formamidopyrimidine-DNA glycosylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 191 | 2.5e-61
|
| mgal | WP_011113476.1 DNA-formamidopyrimidine glycosylase [Mycoplasma gallisepticum] | 290 | 3.5e-100
|
| uure | WP_004025792.1 DNA-formamidopyrimidine glycosylase [Ureaplasma urealyticum] | 263 | 5.6e-90
|
| phyt | WP_011161018.1 DNA-formamidopyrimidine glycosylase [Onion yellows phytoplasma] | 191 | 8.9e-62
|
| bsub | NP_390786.2 formamidopyrimidine-DNA glycosylase; 5-hydroxymethyl-uracil DNA-glycosylase [Bacillus subtilis subsp. subtilis str. 168] | 209 | 4.7e-68
|
| cace | WP_010964372.1 MULTISPECIES: arginase [Clostridium] | 29 | 2.4e-01
|
| ecoli | NP_418092.1 DNA-formamidopyrimidine glycosylase [Escherichia coli str. K-12 substr. MG1655] | 131 | 1.0e-37
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| H2TH | 1 | Formamidopyrimidine-DNA glycosylase H2TH domain | 135-225 | 106.5 | 5e-31
|
| Fapy_DNA_glyco | 1 | Formamidopyrimidine-DNA glycosylase N-terminal domain | 2-117 | 89.6 | 2.1e-25
|
| zf-FPG_IleRS | 1 | Zinc finger found in FPG and IleRS | 250-275 | 31.6 | 1e-07
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077027.1| DNA-formamidopyrimidine glycosylase [Mycoplasma penetrans] | 276/277 (99%) | 1447 | 0.0e+00
|
| ref|WP_004024655.1| DNA-formamidopyrimidine glycosylase [Mycoplasma iowae] | 182/277 (65%) | 940 | 6.0e-125
|
| ref|WP_036452310.1| DNA-formamidopyrimidine glycosylase [Mycoplasma iowae] | 182/277 (65%) | 939 | 8.7e-125
|
| ref|WP_027123862.1| DNA-formamidopyrimidine glycosylase [Mycoplasma pirum] | 169/274 (61%) | 857 | 1.8e-112
|
| ref|WP_011884060.1| DNA-formamidopyrimidine glycosylase [Mycoplasma gallisepticum] | 144/275 (52%) | 742 | 4.8e-95
|
| ref|WP_151029716.1| DNA-formamidopyrimidine glycosylase [Mycoplasma gallisepticum] | 144/275 (52%) | 741 | 6.4e-95
|
| ref|WP_011113476.1| DNA-formamidopyrimidine glycosylase [Mycoplasma gallisepticum] | 143/275 (52%) | 741 | 7.4e-95
|
| ref|WP_027119673.1| DNA-formamidopyrimidine glycosylase [Mycoplasma testudinis] | 152/277 (54%) | 740 | 1.1e-94
|
| ref|WP_014574722.1| DNA-formamidopyrimidine glycosylase [Mycoplasma gallisepticum] | 143/275 (52%) | 738 | 1.6e-94
|
| ref|WP_027121941.1| DNA-formamidopyrimidine glycosylase [Mycoplasma imitans] | 141/275 (51%) | 720 | 9.4e-92
|
Maintained by Jun Ishikawa