General features
| Gene ID | MYPE20
|
| Type | CDS
|
| From | 1450
|
| To | 2586
|
| Strand | +
|
| General name | dnaN
|
| Definition | DNA polymerase III subunit beta
|
| nt length | 1137
|
| aa length | 378
|
| m.w. | 42593.68
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN001 dnaN DNA polymerase III beta subunit 692:1834 | 130 | 5.0e-36
|
| mgen | WP_009885562.1 DNA polymerase III subunit beta [Mycoplasma genitalium] | 119 | 4.9e-32
|
| mpul | WP_010924806.1 DNA polymerase III subunit beta [Mycoplasma pulmonis] | 40 | 2.8e-05
|
| mmob | WP_011264522.1 DNA polymerase III subunit beta [Mycoplasma mobile] | 97 | 2.4e-24
|
| mmyc | NP_975013.1 DNA polymerase III subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 107 | 1.7e-27
|
| mgal | WP_011113989.1 DNA polymerase III subunit beta [Mycoplasma gallisepticum] | 68 | 2.2e-14
|
| uure | WP_012560197.1 DNA polymerase III subunit beta [Ureaplasma urealyticum] | 166 | 1.8e-49
|
| phyt | WP_011160377.1 DNA polymerase III subunit beta [Onion yellows phytoplasma] | 77 | 2.6e-17
|
| bsub | NP_387883.1 DNA polymerase III (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] | 122 | 2.4e-32
|
| cace | WP_010963331.1 MULTISPECIES: DNA polymerase III subunit beta [Clostridium] | 103 | 7.9e-26
|
| ecoli | NP_418156.1 beta sliding clamp [Escherichia coli str. K-12 substr. MG1655] | 80 | 1.3e-17
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| DNA_pol3_beta_3 | 1 | DNA polymerase III beta subunit, C-terminal domain | 256-377 | 73.6 | 1.2e-20
|
| DNA_pol3_beta | 1 | DNA polymerase III beta subunit, N-terminal domain | 7-128 | 58.8 | 5.6e-16
|
| DNA_pol3_beta_2 | 1 | DNA polymerase III beta subunit, central domain | 141-253 | 48.9 | 6.6e-13
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_129374490.1| DNA polymerase III subunit beta [Mycoplasma penetrans] | 376/378 (99%) | 1893 | 0.0e+00
|
| ref|WP_152023085.1| DNA polymerase III subunit beta [Mycoplasma penetrans] | 372/372 (100%) | 1868 | 0.0e+00
|
| ref|WP_004024804.1| DNA polymerase III subunit beta [Mycoplasma iowae] | 176/372 (47%) | 904 | 1.3e-116
|
| ref|WP_027119765.1| DNA polymerase III subunit beta [Mycoplasma testudinis] | 123/371 (33%) | 539 | 8.1e-62
|
| ref|WP_033160039.1| DNA polymerase III subunit beta [Mycoplasma alvi] | 117/371 (31%) | 488 | 4.3e-54
|
| ref|WP_027123739.1| DNA polymerase III subunit beta [Mycoplasma pirum] | 115/371 (30%) | 485 | 8.9e-54
|
| ref|WP_006688589.1| DNA polymerase III subunit beta [Ureaplasma parvum] | 115/372 (30%) | 448 | 3.0e-48
|
| ref|WP_004027299.1| DNA polymerase III subunit beta [Ureaplasma urealyticum] | 111/372 (29%) | 425 | 7.1e-45
|
| ref|WP_004026132.1| DNA polymerase III subunit beta [Ureaplasma urealyticum] | 111/372 (29%) | 425 | 7.4e-45
|
| ref|WP_016829085.1| DNA polymerase III subunit beta [Ureaplasma urealyticum] | 111/372 (29%) | 423 | 1.3e-44
|
Maintained by Jun Ishikawa