General features
| Gene ID | MYPE1990
|
| Type | CDS
|
| From | 252208
|
| To | 253086
|
| Strand | +
|
| General name | polI
|
| Definition | DNA polymerase I: 5'-3' exonuclease
|
| nt length | 879
|
| aa length | 292
|
| m.w. | 33312.87
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN379 polA 5'-3' exonuclease 456272:457147 | 219 | 2.5e-72
|
| mgen | WP_010869399.1 5'-3' exonuclease [Mycoplasma genitalium] | 219 | 3.4e-72
|
| mpul | WP_010925521.1 5'-3' exonuclease [Mycoplasma pulmonis] | 134 | 6.2e-39
|
| mmob | WP_011265008.1 5'-3' exonuclease [Mycoplasma mobile] | 157 | 7.1e-48
|
| mmyc | NP_975660.1 DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 172 | 5.5e-50
|
| mgal | WP_011113475.1 5'-3' exonuclease [Mycoplasma gallisepticum] | 228 | 8.1e-76
|
| uure | WP_004025688.1 5'-3' exonuclease [Ureaplasma urealyticum] | 220 | 1.7e-72
|
| phyt | WP_011161020.1 5'-3' exonuclease [Onion yellows phytoplasma] | 148 | 2.3e-44
|
| bsub | NP_390787.1 DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] | 176 | 5.0e-51
|
| cace | WP_010964413.1 MULTISPECIES: DNA polymerase I [Clostridium] | 159 | 6.9e-45
|
| ecoli | NP_418300.1 DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] | 135 | 1.9e-36
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| 5_3_exonuc_N | 1 | 5'-3' exonuclease, N-terminal resolvase-like domain | 5-169 | 144.3 | 2.9e-42
|
| 5_3_exonuc | 1 | 5'-3' exonuclease, C-terminal SAM fold | 177-271 | 89.6 | 1.6e-25
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077026.1| 5'-3' exonuclease [Mycoplasma penetrans] | 292/292 (100%) | 1509 | 0.0e+00
|
| ref|WP_004024656.1| 5'-3' exonuclease [Mycoplasma iowae] | 196/288 (68%) | 1056 | 2.3e-142
|
| ref|WP_036452313.1| 5'-3' exonuclease [Mycoplasma iowae] | 196/288 (68%) | 1055 | 3.9e-142
|
| ref|WP_027123861.1| hypothetical protein [Mycoplasma pirum] | 139/286 (48%) | 673 | 5.9e-84
|
| ref|WP_036448755.1| 5'-3' exonuclease [Mycoplasma pirum] | 139/286 (48%) | 672 | 7.2e-84
|
| ref|WP_027119672.1| 5'-3' exonuclease [Mycoplasma testudinis] | 137/290 (47%) | 660 | 4.7e-82
|
| ref|WP_033159715.1| 5'-3' exonuclease [Mycoplasma alvi] | 133/289 (46%) | 654 | 3.2e-81
|
| ref|WP_038102959.1| 5'-3' exonuclease [Ureaplasma diversum] | 130/287 (45%) | 619 | 5.4e-76
|
| ref|WP_151029715.1| 5'-3' exonuclease [Mycoplasma gallisepticum] | 123/270 (45%) | 593 | 3.8e-72
|
| ref|WP_014885946.1| 5'-3' exonuclease [Mycoplasma gallisepticum] | 122/270 (45%) | 591 | 8.9e-72
|
Maintained by Jun Ishikawa