General features
| Gene ID | MPN191
|
| Type | CDS
|
| From | 231448
|
| To | 232431
|
| Strand | +
|
| General name | rpoA
|
| Definition | RNA polymerase alpha core subunit
|
| nt length | 984
|
| aa length | 327
|
| m.w. | 36661.22
|
| COG | [K] Transcription
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE9920 rpoA RNA polymerase subunit alpha 1316166:1315171 | 322 | 4.1e-111
|
| mgen | WP_009885862.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma genitalium] | 573 | 0.0e+00
|
| mpul | WP_010925362.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma pulmonis] | 157 | 4.7e-47
|
| mmob | WP_011264781.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma mobile] | 198 | 4.2e-63
|
| mmyc | NP_975697.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 257 | 5.0e-86
|
| mgal | WP_011113887.1 DNA-directed RNA polymerase subunit alpha [Mycoplasma gallisepticum] | 325 | 1.3e-112
|
| uure | WP_004025702.1 DNA-directed RNA polymerase subunit alpha [Ureaplasma urealyticum] | 275 | 8.1e-93
|
| bsub | NP_388024.1 RNA polymerase (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] | 214 | 1.7e-68
|
| cace | WP_010966385.1 MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Clostridium] | 213 | 2.2e-68
|
| ecoli | NP_417754.1 RNA polymerase subunit alpha [Escherichia coli str. K-12 substr. MG1655] | 147 | 1.3e-42
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| RNA_pol_A_CTD | 1 | Bacterial RNA polymerase, alpha chain C terminal domain | 257-320 | 79.0 | 1.6e-22
|
| RNA_pol_L | 1 | RNA polymerase Rpb3/Rpb11 dimerisation domain | 29-236 | 67.0 | 7e-19
|
| RNA_pol_A_bac | 1 | RNA polymerase Rpb3/RpoA insert domain | 65-164 | 58.6 | 7.2e-16
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874548.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pneumoniae] | 327/327 (100%) | 1719 | 0.0e+00
|
| ref|WP_014325393.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pneumoniae] | 326/327 (99%) | 1712 | 0.0e+00
|
| ref|WP_159202223.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pneumoniae] | 325/327 (99%) | 1705 | 0.0e+00
|
| ref|WP_014894603.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma genitalium] | 285/327 (87%) | 1480 | 0.0e+00
|
| ref|WP_009885862.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma genitalium] | 284/327 (86%) | 1477 | 0.0e+00
|
| ref|WP_014894192.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma genitalium] | 283/326 (86%) | 1471 | 0.0e+00
|
| ref|WP_014893972.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma genitalium] | 282/326 (86%) | 1466 | 0.0e+00
|
| ref|WP_027124196.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma pirum] | 166/326 (50%) | 910 | 4.6e-119
|
| ref|WP_033160197.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma alvi] | 167/326 (51%) | 906 | 1.9e-118
|
| ref|WP_027120110.1| DNA-directed RNA polymerase subunit alpha [Mycoplasma testudinis] | 163/327 (49%) | 885 | 4.1e-115
|
Maintained by Jun Ishikawa